View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16647_low_16 (Length: 326)
Name: NF16647_low_16
Description: NF16647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16647_low_16 |
 | |
|
| [»] scaffold0400 (2 HSPs) |
| | |
|
| [»] scaffold0365 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 11 - 308
Target Start/End: Complemental strand, 14466137 - 14465840
Alignment:
| Q |
11 |
cagagagttcattatatgacaactcaatagtatctagattggacttgacaccaaaatatggaataactccatagaaggagttgtttctcaaaactaattc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14466137 |
cagagagttcattatatgacaactcaatagtatctagattggacttcacaccaaaatatggaataactccatagaaggagttgtttctcaaaactaattc |
14466038 |
T |
|
| Q |
111 |
ttggatttttggaagtgatgagaaattgagagtttgaagcgtaccttttagtccaatattggtgagatttaccttgtagattgattttgattcatcatca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14466037 |
ttggatttttggaagtgatgagaaattgagagtttgaagcgtaccttttagtccaatattggtgagatttaccttgtagattgattttgattcatcatca |
14465938 |
T |
|
| Q |
211 |
catgtgattccttcccaactactacaaggattattaccaatccatgaagagagcaatgccttgctgtggttgtcaaggcttgctttccacttcaacag |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
14465937 |
catgtgattccttcccaactactacaaggattattaccaatccatgaagagagtagtgtcttgctttggttgtcaaagcttgctttccacttcaacag |
14465840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 11 - 308
Target Start/End: Complemental strand, 15035570 - 15035270
Alignment:
| Q |
11 |
cagagagttcattatatgacaactcaatagtatctagattggacttgacaccaaaata---tggaataactccatagaaggagttgtttctcaaaactaa |
107 |
Q |
| |
|
||||||||||||| |||||| |||| ||| |||||||||||| | ||||||| || ||||| || || |||||||||||| | || |||||||| |
|
|
| T |
15035570 |
cagagagttcatttagtgacaaatcaagagtttctagattggacattacaccaatatggtgtggaactacaccgtagaaggagttgctgcttaaaactaa |
15035471 |
T |
|
| Q |
108 |
ttcttggatttttggaagtgatgagaaattgagagtttgaagcgtaccttttagtccaatattggtgagatttaccttgtagattgattttgattcatca |
207 |
Q |
| |
|
|| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||| |
|
|
| T |
15035470 |
acttttcaatttcggaagtgatgagaaattgagagtttgaagcgtaccttttagtccaatattggtgagatttaccttgttgatggattttgaatcatca |
15035371 |
T |
|
| Q |
208 |
tcacatgtgattccttcccaactactacaaggattattaccaatccatgaagagagcaatgccttgctgtggttgtcaaggcttgctttccacttcaaca |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
15035370 |
tcacatgtgattccttcccaactactacaaggattattaccaatccatgaagagagcaatgccctgttgtggttgtcaaggcttgctttccacttcaaca |
15035271 |
T |
|
| Q |
308 |
g |
308 |
Q |
| |
|
| |
|
|
| T |
15035270 |
g |
15035270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 113 - 308
Target Start/End: Complemental strand, 15015992 - 15015797
Alignment:
| Q |
113 |
ggatttttggaagtgatgagaaattgagagtttgaagcgtaccttttagtccaatattggtgagatttaccttgtagattgattttgattcatcatcaca |
212 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||| |
|
|
| T |
15015992 |
ggatttttggaagtgatgagaaattgagactttgaagtgtaccttttagtccaatattggtgagatttaccttgttgatggattttgaatcatcatcaca |
15015893 |
T |
|
| Q |
213 |
tgtgattccttcccaactactacaaggattattaccaatccatgaagagagcaatgccttgctgtggttgtcaaggcttgctttccacttcaacag |
308 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| |||| |||||||||||||||| |
|
|
| T |
15015892 |
tgtgattccttcccagctactacaaggattattaccaatccatgaagagagtaatgctttgctttggttgtcaaagctttctttccacttcaacag |
15015797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 112 - 308
Target Start/End: Complemental strand, 15000987 - 15000791
Alignment:
| Q |
112 |
tggatttttggaagtgatgagaaattgagagtttgaagcgtaccttttagtccaatattggtgagatttaccttgtagattgattttgattcatcatcac |
211 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| |||||||||| || ||||| |
|
|
| T |
15000987 |
tggatttttgtaagtgatgagaaattgagagtttgaagcgtaccttttagtccaatattggtgagatttatcatgttgatggattttgattgataatcac |
15000888 |
T |
|
| Q |
212 |
atgtgattccttcccaactactacaaggattattaccaatccatgaagagagcaatgccttgctgtggttgtcaaggcttgctttccacttcaacag |
308 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
15000887 |
acgtgattccttcccaactactacaaggattattgccaatccatgaagagagcaatgccctgctgtggttgtcaaggcttgccttccatttcaacag |
15000791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 69 - 308
Target Start/End: Original strand, 14534584 - 14534823
Alignment:
| Q |
69 |
tggaataactccatagaaggagttgtttctcaaaactaattcttggatttttggaagtgatgagaaattgagagtttgaagcgtaccttttagtccaata |
168 |
Q |
| |
|
||||| |||||| || ||| |||||||| | |||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14534584 |
tggaacaactccgtacaagaagttgtttgttaaaactaaagtgtggatttttgtaagtgatgagaaattgagactttgaagcgtaccttttagtccaata |
14534683 |
T |
|
| Q |
169 |
ttggtgagatttaccttgtagattgattttgattcatcatcacatgtgattccttcccaactactacaaggattattaccaatccatgaagagagcaatg |
268 |
Q |
| |
|
| |||||||||||||||| ||| || ||||||| || |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
14534684 |
tcagtgagatttaccttgttgatggactttgatttataatcacacgtgattccttcccaactactacaaggattattgccaatccatgaagagagcaaag |
14534783 |
T |
|
| Q |
269 |
ccttgctgtggttgtcaaggcttgctttccacttcaacag |
308 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14534784 |
cattgctatggttgtcaaggcttgctttccacttcaacag |
14534823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 77 - 308
Target Start/End: Complemental strand, 14502175 - 14501947
Alignment:
| Q |
77 |
ctccatagaaggagttgtttctcaaaactaattcttggatttttggaagtgatgagaaattgagagtttgaagcgtaccttttagtccaatattggtgag |
176 |
Q |
| |
|
|||||||||| ||||||||| | |||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
14502175 |
ctccatagaatgagttgttttttaaaactaaggtgcggatttttggaagtgatgataaattgagactttgaagcgtaccttttagtccaatatcagtgag |
14502076 |
T |
|
| Q |
177 |
atttaccttgtagattgattttgattcatcatcacatgtgattccttcccaactactacaaggattattaccaatccatgaagagagcaatgccttgctg |
276 |
Q |
| |
|
||||||||||| ||| |||||||| |||| |||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||| | ||| |
|
|
| T |
14502075 |
atttaccttgttgatggattttgaatcattatcacatgtgattccttcccaa---ctacaaggattattaccattccatgaagaaagcaatgccctactg |
14501979 |
T |
|
| Q |
277 |
tggttgtcaaggcttgctttccacttcaacag |
308 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |
|
|
| T |
14501978 |
ttgttgtcaaggcttgctttccacttcaacag |
14501947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 69 - 305
Target Start/End: Complemental strand, 15023750 - 15023517
Alignment:
| Q |
69 |
tggaataactccatagaaggagttgtttctcaaaactaattcttggatttttggaagtgatgagaaattgagagtttgaagcgtaccttttagtccaata |
168 |
Q |
| |
|
||||||||||||||| |||||||||||| | |||||||| || ||||| ||||||||||||||||||||| ||||||| ||||| |||| ||||||| |
|
|
| T |
15023750 |
tggaataactccatacaaggagttgtttgttaaaactaaggtgtgtattttcggaagtgatgagaaattgagactttgaagagtaccgtttaatccaata |
15023651 |
T |
|
| Q |
169 |
ttggtgagatttaccttgtagattgattttgattcatcatcacatgtgattccttcccaactactacaaggattattaccaatccatgaagagagcaatg |
268 |
Q |
| |
|
||||||||||||||||||| ||| || || ||||||| |||||| |||||||||||||| || |||||||||||||||||||||||||||||| |||| |
|
|
| T |
15023650 |
ttggtgagatttaccttgttgatggacttcgattcataatcacacgtgattccttccca---accacaaggattattaccaatccatgaagagagaaatg |
15023554 |
T |
|
| Q |
269 |
ccttgctgtggttgtcaaggcttgctttccacttcaa |
305 |
Q |
| |
|
|| |||| |||||||||||||||| |||||||||||| |
|
|
| T |
15023553 |
ccctgctatggttgtcaaggcttgttttccacttcaa |
15023517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 69 - 305
Target Start/End: Complemental strand, 15009633 - 15009400
Alignment:
| Q |
69 |
tggaataactccatagaaggagttgtttctcaaaactaattcttggatttttggaagtgatgagaaattgagagtttgaagcgtaccttttagtccaata |
168 |
Q |
| |
|
||||| |||||| || ||| |||||||| | |||||||| ||||||||||||||||||||||| |||||| | ||||| |||||||||||||||||| |
|
|
| T |
15009633 |
tggaacaactccgtacaagaagttgtttgttaaaactaaagtgtggatttttggaagtgatgagaagttgagactctgaagtgtaccttttagtccaata |
15009534 |
T |
|
| Q |
169 |
ttggtgagatttaccttgtagattgattttgattcatcatcacatgtgattccttcccaactactacaaggattattaccaatccatgaagagagcaatg |
268 |
Q |
| |
|
||||||||||||||||||| ||| || || ||||||| |||||| |||||||||||||| || |||||||||||||||||||||||||||||| |||| |
|
|
| T |
15009533 |
ttggtgagatttaccttgttgatggacttcgattcataatcacacgtgattccttccca---accacaaggattattaccaatccatgaagagagaaatg |
15009437 |
T |
|
| Q |
269 |
ccttgctgtggttgtcaaggcttgctttccacttcaa |
305 |
Q |
| |
|
|| |||| |||||||||||||||| |||||||||||| |
|
|
| T |
15009436 |
ccctgctatggttgtcaaggcttgatttccacttcaa |
15009400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 69 - 305
Target Start/End: Complemental strand, 15030731 - 15030498
Alignment:
| Q |
69 |
tggaataactccatagaaggagttgtttctcaaaactaattcttggatttttggaagtgatgagaaattgagagtttgaagcgtaccttttagtccaata |
168 |
Q |
| |
|
||||| |||||| || ||| |||||||| | |||||||| ||||||||||||||||||||||| |||||| | ||||| |||||||||||||||||| |
|
|
| T |
15030731 |
tggaacaactccgtacaagaagttgtttgttaaaactaaagtgtggatttttggaagtgatgagaagttgagactctgaagtgtaccttttagtccaata |
15030632 |
T |
|
| Q |
169 |
ttggtgagatttaccttgtagattgattttgattcatcatcacatgtgattccttcccaactactacaaggattattaccaatccatgaagagagcaatg |
268 |
Q |
| |
|
||||||||||||||||||| ||| || || ||||||| |||||| |||||||||||||| || |||||||||||||||||||||||||||||| |||| |
|
|
| T |
15030631 |
ttggtgagatttaccttgttgatggacttcgattcataatcacacgtgattccttccca---accacaaggattattaccaatccatgaagagagaaatg |
15030535 |
T |
|
| Q |
269 |
ccttgctgtggttgtcaaggcttgctttccacttcaa |
305 |
Q |
| |
|
|| |||| |||||||||||||||| |||||||||||| |
|
|
| T |
15030534 |
ccctgctatggttgtcaaggcttgatttccacttcaa |
15030498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 67 - 302
Target Start/End: Complemental strand, 14480988 - 14480741
Alignment:
| Q |
67 |
tatggaataactccatagaaggagttgtttctcaaaactaattcttggatttttggaagtgatgagaaattgagagtttgaagcgtaccttttagtccaa |
166 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||| |
|
|
| T |
14480988 |
tatggaataactccatagaagaagttgtttctcaaaactaatttttggatttttggaagtgatgagaaattgagactttgaagtgtaccttttagttcaa |
14480889 |
T |
|
| Q |
167 |
tattggtgagatttaccttgtagattgattttgattcatcatcacatgtgattccttccca------------actactacaaggattattaccaatcca |
254 |
Q |
| |
|
| ||||||||| || ||||| || |||||||| | || ||||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14480888 |
aactggtgagatctatcttgttaatagattttgagttattatcacatatgattccttcccaacttagtccaatactactacaaggattattaccaatcca |
14480789 |
T |
|
| Q |
255 |
tgaagagagcaatgccttgctgtggttgtcaaggcttgctttccactt |
302 |
Q |
| |
|
||||||||| | | ||||||| || ||||||| ||||||||||||||| |
|
|
| T |
14480788 |
tgaagagagtatttccttgctttgtttgtcaaagcttgctttccactt |
14480741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 69 - 305
Target Start/End: Original strand, 14524607 - 14524840
Alignment:
| Q |
69 |
tggaataactccatagaaggagttgtttctcaaaactaattcttggatttttggaagtgatgagaaattgagagtttgaagcgtaccttttagtccaata |
168 |
Q |
| |
|
||||| |||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||| |
|
|
| T |
14524607 |
tggaacaactccatagaatgagttgtttcttaaaactaagctatggatttttggaagtgatgagatattgagattttgaagtgtaccttttagtccaata |
14524706 |
T |
|
| Q |
169 |
ttggtgagatttaccttgtagattgattttgattcatcatcacatgtgattccttcccaactactacaaggattattaccaatccatgaagagagcaatg |
268 |
Q |
| |
|
| | |||| || ||||||||| |||||||| | |||||||||||||||| |||| | | ||||| |||||||||||||||||||||||||| | |
|
|
| T |
14524707 |
cttgcaagatgtatcttgtagatagattttgacttgccatcacatgtgattcccaccca---attgcaaggcttattaccaatccatgaagagagcaaag |
14524803 |
T |
|
| Q |
269 |
ccttgctgtggttgtcaaggcttgctttccacttcaa |
305 |
Q |
| |
|
|||||| |||||||||| |||||||||||| ||||| |
|
|
| T |
14524804 |
acttgctttggttgtcaaagcttgctttccatttcaa |
14524840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 129; Significance: 9e-67; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 113 - 305
Target Start/End: Complemental strand, 5440 - 5248
Alignment:
| Q |
113 |
ggatttttggaagtgatgagaaattgagagtttgaagcgtaccttttagtccaatattggtgagatttaccttgtagattgattttgattcatcatcaca |
212 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||| |||| |||| |||||||| |||||| ||| |
|
|
| T |
5440 |
ggatttttggaagtgatgagaaattgagactttgaagcataccttttaggccaatattggtgagatttaacttgcagatagattttgagtcatcacaaca |
5341 |
T |
|
| Q |
213 |
tgtgattccttcccaactactacaaggattattaccaatccatgaagagagcaatgccttgctgtggttgtcaaggcttgctttccacttcaa |
305 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| | || |||||||||| |||||||||||||||||| |
|
|
| T |
5340 |
tgtgattccttcccaactactacaaggatcgttaccgatccatgaagagagcaatgccctactatggttgtcaaagcttgctttccacttcaa |
5248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 11 - 305
Target Start/End: Complemental strand, 11041 - 10747
Alignment:
| Q |
11 |
cagagagttcattatatgacaactcaatagtatctagattggacttgacaccaaaata---tggaataactccatagaaggagttgtttctcaaaactaa |
107 |
Q |
| |
|
||||||||||||| |||||| |||| ||| |||||||||||| | ||||||| || ||||| ||||||| |||| ||||||||||| |||||||| |
|
|
| T |
11041 |
cagagagttcatttagtgacaaatcaagagtttctagattggacattacaccaatatgatgtggaacaactccaaagaatgagttgtttcttaaaactaa |
10942 |
T |
|
| Q |
108 |
ttcttggatttttggaagtgatgagaaattgagagtttgaagcgtaccttttagtccaatattggtgagatttaccttgtagattgattttgattcatca |
207 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||| | | |||| || ||||||||| |||||||| | || |
|
|
| T |
10941 |
gctatggatttttggaagtgatgagatattgagattttgaagtgtaccttttagtccaatacttgcaagatgtatcttgtagatagattttgacttgcca |
10842 |
T |
|
| Q |
208 |
tcacatgtgattccttcccaactactacaaggattattaccaatccatgaagagagcaatgccttgctgtggttgtcaaggcttgctttccacttcaa |
305 |
Q |
| |
|
|||||||||||||| |||| | | ||||| |||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||| ||||| |
|
|
| T |
10841 |
tcacatgtgattcccaccca---attgcaaggcttattaccaatccatgaagagagcaatgacttgctttggttgtcaaagcttgctttccatttcaa |
10747 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 129; Significance: 9e-67; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 113 - 305
Target Start/End: Complemental strand, 6084 - 5892
Alignment:
| Q |
113 |
ggatttttggaagtgatgagaaattgagagtttgaagcgtaccttttagtccaatattggtgagatttaccttgtagattgattttgattcatcatcaca |
212 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||| |||| |||| |||||||| |||||| ||| |
|
|
| T |
6084 |
ggatttttggaagtgatgagaaattgagactttgaagcataccttttaggccaatattggtgagatttaacttgcagatagattttgagtcatcacaaca |
5985 |
T |
|
| Q |
213 |
tgtgattccttcccaactactacaaggattattaccaatccatgaagagagcaatgccttgctgtggttgtcaaggcttgctttccacttcaa |
305 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| | || |||||||||| |||||||||||||||||| |
|
|
| T |
5984 |
tgtgattccttcccaactactacaaggatcgttaccgatccatgaagagagcaatgccctactatggttgtcaaagcttgctttccacttcaa |
5892 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 11 - 305
Target Start/End: Complemental strand, 11684 - 11390
Alignment:
| Q |
11 |
cagagagttcattatatgacaactcaatagtatctagattggacttgacaccaaaata---tggaataactccatagaaggagttgtttctcaaaactaa |
107 |
Q |
| |
|
||||||||||||| |||||| |||| ||| |||||||||||| | ||||||| || ||||| ||||||| |||| ||||||||||| |||||||| |
|
|
| T |
11684 |
cagagagttcatttagtgacaaatcaagagtttctagattggacattacaccaatatgatgtggaacaactccaaagaatgagttgtttcttaaaactaa |
11585 |
T |
|
| Q |
108 |
ttcttggatttttggaagtgatgagaaattgagagtttgaagcgtaccttttagtccaatattggtgagatttaccttgtagattgattttgattcatca |
207 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||| | | |||| || ||||||||| |||||||| | || |
|
|
| T |
11584 |
gctatggatttttggaagtgatgagatattgagattttgaagtgtaccttttagtccaatacttgcaagatgtatcttgtagatagattttgacttgcca |
11485 |
T |
|
| Q |
208 |
tcacatgtgattccttcccaactactacaaggattattaccaatccatgaagagagcaatgccttgctgtggttgtcaaggcttgctttccacttcaa |
305 |
Q |
| |
|
|||||||||||||| |||| | | ||||| |||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||| ||||| |
|
|
| T |
11484 |
tcacatgtgattcccaccca---attgcaaggcttattaccaatccatgaagagagcaatgacttgctttggttgtcaaagcttgctttccatttcaa |
11390 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 111 - 185
Target Start/End: Complemental strand, 16023156 - 16023082
Alignment:
| Q |
111 |
ttggatttttggaagtgatgagaaattgagagtttgaagcgtaccttttagtccaatattggtgagatttacctt |
185 |
Q |
| |
|
|||||| ||||||||||||||||| || ||| ||| |||||||||||| | ||| ||||| |||||||||||||| |
|
|
| T |
16023156 |
ttggatatttggaagtgatgagaagttaagactttcaagcgtacctttcaatcccatatttgtgagatttacctt |
16023082 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 111 - 185
Target Start/End: Complemental strand, 16101248 - 16101174
Alignment:
| Q |
111 |
ttggatttttggaagtgatgagaaattgagagtttgaagcgtaccttttagtccaatattggtgagatttacctt |
185 |
Q |
| |
|
|||||| ||||||||||||||||| || ||| ||| |||||||||||| | ||| ||||| |||||||||||||| |
|
|
| T |
16101248 |
ttggatatttggaagtgatgagaagttaagactttcaagcgtacctttcaatcccatatttgtgagatttacctt |
16101174 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 111 - 185
Target Start/End: Complemental strand, 16170926 - 16170852
Alignment:
| Q |
111 |
ttggatttttggaagtgatgagaaattgagagtttgaagcgtaccttttagtccaatattggtgagatttacctt |
185 |
Q |
| |
|
|||||| ||||||||||||||||| || ||| ||| |||||||||||| | ||| ||||| |||||||||||||| |
|
|
| T |
16170926 |
ttggatatttggaagtgatgagaagttaagactttcaagcgtacctttcaatcccatatttgtgagatttacctt |
16170852 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 17847331 - 17847267
Alignment:
| Q |
118 |
tttggaagtgatgagaaattgagagtttgaagcgtaccttttagtccaatattggtgagatttac |
182 |
Q |
| |
|
||||||| ||||||||| |||||||||| ||| |||||||||| ||| || || ||||||||||| |
|
|
| T |
17847331 |
tttggaaatgatgagaagttgagagtttcaagtgtaccttttaatcccatttttgtgagatttac |
17847267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 307
Target Start/End: Complemental strand, 16170800 - 16170733
Alignment:
| Q |
240 |
attattaccaatccatgaagagagcaatgccttgctgtggttgtcaaggcttgctttccacttcaaca |
307 |
Q |
| |
|
|||||| ||| |||||||||| ||||| | | ||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
16170800 |
attattgccactccatgaagatagcaaagtttggctatggttgtcaagacttgctttccacttcaaca |
16170733 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 185
Target Start/End: Complemental strand, 14603685 - 14603611
Alignment:
| Q |
111 |
ttggatttttggaagtgatgagaaattgagagtttgaagcgtaccttttagtccaatattggtgagatttacctt |
185 |
Q |
| |
|
|||||| ||||||||||||||||| || ||| ||| ||||||||||| | ||| ||||| || ||||||||||| |
|
|
| T |
14603685 |
ttggatatttggaagtgatgagaagttaagactttcgagcgtacctttcaatcccatatttgtcagatttacctt |
14603611 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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