View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16647_low_2 (Length: 636)
Name: NF16647_low_2
Description: NF16647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16647_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 589; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 16 - 612
Target Start/End: Original strand, 51799728 - 51800324
Alignment:
| Q |
16 |
aatatcgcatttatcggttgaattaaatgtttcgacaatattattttattattaggtgttttgacaattttagcacacgaaatggggcaattcatgacta |
115 |
Q |
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| T |
51799728 |
aatatcgcatttatcggttgaattaaatgtttcgacaatattattttattattaggtgttttgacaattttagcacacgaaatggggcaattcatgacta |
51799827 |
T |
|
| Q |
116 |
gtgacaaaaactgttttcgacctgttcttttatccaatttttaaactgtgtctcgtgggtgcgccattagttttttctactctaaaataagtcacaaatg |
215 |
Q |
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| T |
51799828 |
gtgacaaaaactgttttcgacctgttcttttatccaatttttaaactgtgtctcgtgggtgcgccattagttttttctactctaaaataagtcacaaatg |
51799927 |
T |
|
| Q |
216 |
tttctcaagtgccaaccatgtcaacaaagtcaaattgatccattcctctttggaacttgaaaacattattacattacatgctaatgccaactatattaca |
315 |
Q |
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| T |
51799928 |
tttctcaagtgccaaccatgtcaacaaagtcaaattgatccattcctctttggaacttgaaaacattattacattacatgctaatgccaactatattaca |
51800027 |
T |
|
| Q |
316 |
ttttccttattaagtagaaatgcttacaccgataggtgtttaattttgtgtttgttaccagtttggttgactattttatagtgcatcagttaggtctatc |
415 |
Q |
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| T |
51800028 |
ttttccttattaagtagaaatgcttacaccgataggtgtttaattttgtgtttgttaccagtttggttgactattttatagtgcatcagttaggtctatc |
51800127 |
T |
|
| Q |
416 |
tggtaatgtacatttcataatctatgataaaccagtcattttccactttaggtattcaatttaattttgtatttgcacaatttcttgtttcaactttcaa |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51800128 |
tggtaatgtacatttcataatctatgataaaccagtcattttccactttaggtattcaatttaattttgtatttgcacaatttcttgtttcaactttcaa |
51800227 |
T |
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| Q |
516 |
ccggtactaaaacggttattgatcaaattttacttatgtttagactgatgtttagattactatggcctaactcacctcaaaatcgaagagttaagat |
612 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51800228 |
ccggtactaaaacggttattgatcaaattttacttatctttagactgaagtttagattactatggcctaactcacctcaaaatcgaagagttaagat |
51800324 |
T |
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