View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16647_low_24 (Length: 244)
Name: NF16647_low_24
Description: NF16647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16647_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 5 - 164
Target Start/End: Original strand, 37809277 - 37809431
Alignment:
| Q |
5 |
tatagccacaaatataataatatcttattcaggccgttttcaacaaattatgcagtaccaaagatgttctttattgaatctttattgtaattgcatgtag |
104 |
Q |
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| T |
37809277 |
tatagctacaaatacaataatatcttattcagg---ttttcaacaaa--atgcagtgccaaagatgttcttaattgaatctgtattgtaattgcatgtag |
37809371 |
T |
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| Q |
105 |
cagaatgttagagaatatgattttaatttttaattaataccttcttctaaccttatgact |
164 |
Q |
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| T |
37809372 |
cagaatgttagagaatatgattttaatttttaattaataccttcttctaaccttatgact |
37809431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 2 - 160
Target Start/End: Complemental strand, 37646527 - 37646380
Alignment:
| Q |
2 |
tattatagccacaaatataataatatcttattcaggccgttttcaacaaattatgcagtaccaaagatgttctttattgaatctttattgtaattgcatg |
101 |
Q |
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| T |
37646527 |
tattatagccacaaatataataatatcttattcaggccgttttcaacaaattatgcagtaccaaagatgttcttt-----------attgtaattgcatg |
37646439 |
T |
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| Q |
102 |
tagcagaatgttagagaatatgattttaatttttaattaataccttcttctaaccttat |
160 |
Q |
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| T |
37646438 |
tagcagaatgttagagaatatgattttaatttttaattaataccttctagtaaccttat |
37646380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 2 - 160
Target Start/End: Original strand, 37814316 - 37814463
Alignment:
| Q |
2 |
tattatagccacaaatataataatatcttattcaggccgttttcaacaaattatgcagtaccaaagatgttctttattgaatctttattgtaattgcatg |
101 |
Q |
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| T |
37814316 |
tattatagccacaaatataataatatcttattcaggccgttttcaacaaattatgcagtaccaaagatgt-----------tctttattgtaattgcatg |
37814404 |
T |
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| Q |
102 |
tagcagaatgttagagaatatgattttaatttttaattaataccttcttctaaccttat |
160 |
Q |
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| T |
37814405 |
tagcagaatgttagagaatatgattttaatttttaattaataccttctagtaaccttat |
37814463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 37809461 - 37809529
Alignment:
| Q |
162 |
actaactgcctaactccctaactgtcatctgtt-agtaaagttagttagaatgcagtcagttagttaca |
229 |
Q |
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| T |
37809461 |
actaactgccgaactccctaactgtcagccgtttagaaaagttggttagaatgcaatcagttagttaca |
37809529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 112
Target Start/End: Original strand, 51590193 - 51590226
Alignment:
| Q |
79 |
tgaatctttattgtaattgcatgtagcagaatgt |
112 |
Q |
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| T |
51590193 |
tgaatctttattgtaattgcatgtaacagaatgt |
51590226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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