View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16647_low_27 (Length: 232)
Name: NF16647_low_27
Description: NF16647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16647_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 14166358 - 14166561
Alignment:
| Q |
15 |
agtttccttggccacaacatgctcaagaagaacactgtttcttttgtagtaaacatctgagatgacttttaggtcatgctgagctctgctcacaatcaca |
114 |
Q |
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| T |
14166358 |
agtttccttggccacaacatgctcaagaagaacactgtttcttttgtagtaaacatctgagatgacttttaggtcatgctgagctctgctcacaatcaca |
14166457 |
T |
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| Q |
115 |
cgggtgagcgcatcctcatcggttccaaccttcttgattgcatctcgcaccacctacaatatgatcagaaaatgtaaagtt-aaatcattgtagtaacaa |
213 |
Q |
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| T |
14166458 |
cgggtcagcgcatcctcatcagttccaaccttcttgattgcatctcgcaccacctacgatttgatcagaaaatgtaaagttcaaatcattgtagtaacaa |
14166557 |
T |
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| Q |
214 |
tatt |
217 |
Q |
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|||| |
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| T |
14166558 |
tatt |
14166561 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 5189592 - 5189555
Alignment:
| Q |
106 |
acaatcacacgggtgagcgcatcctcatcggttccaac |
143 |
Q |
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| T |
5189592 |
acaatcacacgggtgagtgcatcctcatcggttccaac |
5189555 |
T |
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