View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16647_low_28 (Length: 224)

Name: NF16647_low_28
Description: NF16647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16647_low_28
NF16647_low_28
[»] chr2 (5 HSPs)
chr2 (25-211)||(13558753-13558942)
chr2 (157-193)||(18570985-18571021)
chr2 (157-193)||(18622428-18622464)
chr2 (158-190)||(43586018-43586050)
chr2 (157-189)||(44046605-44046637)
[»] scaffold0571 (1 HSPs)
scaffold0571 (157-191)||(7703-7737)
[»] chr7 (7 HSPs)
chr7 (157-193)||(44172900-44172936)
chr7 (158-193)||(2143863-2143898)
chr7 (157-193)||(650532-650568)
chr7 (158-190)||(2144552-2144584)
chr7 (158-190)||(5937434-5937466)
chr7 (157-193)||(37775995-37776031)
chr7 (157-193)||(38134416-38134452)
[»] chr6 (5 HSPs)
chr6 (157-193)||(10157997-10158033)
chr6 (158-190)||(6751895-6751927)
chr6 (157-193)||(9024186-9024222)
chr6 (158-190)||(10031584-10031616)
chr6 (158-190)||(19369831-19369863)
[»] chr4 (8 HSPs)
chr4 (37-101)||(17941309-17941368)
chr4 (156-193)||(9988709-9988746)
chr4 (157-190)||(43188625-43188658)
chr4 (157-193)||(683065-683101)
chr4 (158-190)||(13307891-13307923)
chr4 (157-193)||(18513251-18513287)
chr4 (157-205)||(34589704-34589752)
chr4 (158-190)||(37496718-37496750)
[»] chr3 (2 HSPs)
chr3 (157-193)||(9210835-9210871)
chr3 (161-193)||(34409352-34409384)
[»] chr5 (4 HSPs)
chr5 (37-67)||(33824442-33824472)
chr5 (160-193)||(10009842-10009875)
chr5 (157-193)||(19737492-19737528)
chr5 (158-190)||(30080514-30080546)
[»] chr1 (2 HSPs)
chr1 (157-191)||(14332421-14332455)
chr1 (156-193)||(26307082-26307119)
[»] chr8 (3 HSPs)
chr8 (156-193)||(31548303-31548340)
chr8 (158-190)||(31119101-31119133)
chr8 (158-190)||(42874536-42874568)


Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 25 - 211
Target Start/End: Complemental strand, 13558942 - 13558753
Alignment:
Q  25 caaacttgtttcagaattgtttatgaattatgataagccaaatttagacattgatttgttgttttgtgatgtgaatgtcgatgaattatgcctggtttgg 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13558942 caaacttgtttcagaattgtttatgaattatgataagccaaatttagacattgatttgttgttttgtgatgtgaatgtcgatgaattatgcctggtttgg 13558843  T
Q  125 t---tcaatcactatttcgtggttaattaatcgatatttgagaaaatgacataattcaatgcaatcacatgtcttgtcggtgtctgtgct 211  Q
    |   |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13558842 ttagtcaatcactatttcgtggttaattaatcgatatttgagaaaatgacataatttaatgcaatcacatgtcttgtcggtgtctgtgct 13558753  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 18570985 - 18571021
Alignment:
Q  157 atttgagaaaatgacataattcaatgcaatcacatgt 193  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  18570985 atttgagaaaatgacataattcaatgtaatcatatgt 18571021  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 18622428 - 18622464
Alignment:
Q  157 atttgagaaaatgacataattcaatgcaatcacatgt 193  Q
    |||| |||||||||||||||| |||||||||||||||    
T  18622428 atttaagaaaatgacataattaaatgcaatcacatgt 18622464  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 190
Target Start/End: Complemental strand, 43586050 - 43586018
Alignment:
Q  158 tttgagaaaatgacataattcaatgcaatcaca 190  Q
    ||||||||||||||||||||||||| |||||||    
T  43586050 tttgagaaaatgacataattcaatgtaatcaca 43586018  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 44046605 - 44046637
Alignment:
Q  157 atttgagaaaatgacataattcaatgcaatcac 189  Q
    ||||||||||||||||||||| |||||||||||    
T  44046605 atttgagaaaatgacataattgaatgcaatcac 44046637  T

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Target: scaffold0571 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 191
Target Start/End: Original strand, 7703 - 7737
Alignment:
Q  157 atttgagaaaatgacataattcaatgcaatcacat 191  Q
    |||||||||||||||||||||||||||||||||||    
T  7703 atttgagaaaatgacataattcaatgcaatcacat 7737  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 44172936 - 44172900
Alignment:
Q  157 atttgagaaaatgacataattcaatgcaatcacatgt 193  Q
    |||||||||||||||||||||||||| ||||||||||    
T  44172936 atttgagaaaatgacataattcaatgtaatcacatgt 44172900  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 193
Target Start/End: Complemental strand, 2143898 - 2143863
Alignment:
Q  158 tttgagaaaatgacataattcaatgcaatcacatgt 193  Q
    ||||||||||||||||||||||||| ||||||||||    
T  2143898 tttgagaaaatgacataattcaatgtaatcacatgt 2143863  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 650532 - 650568
Alignment:
Q  157 atttgagaaaatgacataattcaatgcaatcacatgt 193  Q
    |||| |||||||||||||||| |||||||||||||||    
T  650532 atttaagaaaatgacataattgaatgcaatcacatgt 650568  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 190
Target Start/End: Complemental strand, 2144584 - 2144552
Alignment:
Q  158 tttgagaaaatgacataattcaatgcaatcaca 190  Q
    ||||||||||||||||||||||||| |||||||    
T  2144584 tttgagaaaatgacataattcaatgtaatcaca 2144552  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 190
Target Start/End: Complemental strand, 5937466 - 5937434
Alignment:
Q  158 tttgagaaaatgacataattcaatgcaatcaca 190  Q
    ||||||||||||||||||||||||| |||||||    
T  5937466 tttgagaaaatgacataattcaatgtaatcaca 5937434  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 37775995 - 37776031
Alignment:
Q  157 atttgagaaaatgacataattcaatgcaatcacatgt 193  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  37775995 atttgagaaaatgacataattaaatgtaatcacatgt 37776031  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 38134452 - 38134416
Alignment:
Q  157 atttgagaaaatgacataattcaatgcaatcacatgt 193  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  38134452 atttgagaaaatgacataattcaatgtaatcatatgt 38134416  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 10157997 - 10158033
Alignment:
Q  157 atttgagaaaatgacataattcaatgcaatcacatgt 193  Q
    |||||||||||||||||||||||||| ||||||||||    
T  10157997 atttgagaaaatgacataattcaatgtaatcacatgt 10158033  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 190
Target Start/End: Complemental strand, 6751927 - 6751895
Alignment:
Q  158 tttgagaaaatgacataattcaatgcaatcaca 190  Q
    ||||||||||||||||||||||||| |||||||    
T  6751927 tttgagaaaatgacataattcaatgtaatcaca 6751895  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 9024222 - 9024186
Alignment:
Q  157 atttgagaaaatgacataattcaatgcaatcacatgt 193  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  9024222 atttgagaaaatgacataattcaatgtaatcatatgt 9024186  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 190
Target Start/End: Original strand, 10031584 - 10031616
Alignment:
Q  158 tttgagaaaatgacataattcaatgcaatcaca 190  Q
    ||||||||||||||||||||||||| |||||||    
T  10031584 tttgagaaaatgacataattcaatgtaatcaca 10031616  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 190
Target Start/End: Original strand, 19369831 - 19369863
Alignment:
Q  158 tttgagaaaatgacataattcaatgcaatcaca 190  Q
    ||||||||||||||||||||||||| |||||||    
T  19369831 tttgagaaaatgacataattcaatgtaatcaca 19369863  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 17941368 - 17941309
Alignment:
Q  37 agaattgtttatgaattatgataagccaaatttagacattgatttgttgttttgtgatgtgaatg 101  Q
    ||||||||||||||||||||||||  ||||||| ||||     ||||||||||||||||||||||    
T  17941368 agaattgtttatgaattatgataaatcaaatttggaca-----ttgttgttttgtgatgtgaatg 17941309  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 9988746 - 9988709
Alignment:
Q  156 tatttgagaaaatgacataattcaatgcaatcacatgt 193  Q
    |||||||||||||||||||||| |||| ||||||||||    
T  9988746 tatttgagaaaatgacataattgaatgtaatcacatgt 9988709  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 190
Target Start/End: Original strand, 43188625 - 43188658
Alignment:
Q  157 atttgagaaaatgacataattcaatgcaatcaca 190  Q
    ||||||||||||||||||||||||||| ||||||    
T  43188625 atttgagaaaatgacataattcaatgcgatcaca 43188658  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 683065 - 683101
Alignment:
Q  157 atttgagaaaatgacataattcaatgcaatcacatgt 193  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  683065 atttgagaaaatgacataattgaatgtaatcacatgt 683101  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 190
Target Start/End: Original strand, 13307891 - 13307923
Alignment:
Q  158 tttgagaaaatgacataattcaatgcaatcaca 190  Q
    ||||||||||||||||||||||||| |||||||    
T  13307891 tttgagaaaatgacataattcaatgtaatcaca 13307923  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 18513287 - 18513251
Alignment:
Q  157 atttgagaaaatgacataattcaatgcaatcacatgt 193  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  18513287 atttgagaaaatgacataattcaatgtaatcatatgt 18513251  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 34589752 - 34589704
Alignment:
Q  157 atttgagaaaatgacataattcaatgcaatcacatgtcttgtcggtgtc 205  Q
    |||||||||||||||||||||||||| |||||  |||| |||| |||||    
T  34589752 atttgagaaaatgacataattcaatgtaatcatgtgtcgtgtcagtgtc 34589704  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 190
Target Start/End: Original strand, 37496718 - 37496750
Alignment:
Q  158 tttgagaaaatgacataattcaatgcaatcaca 190  Q
    ||||||||||||||||||||||||| |||||||    
T  37496718 tttgagaaaatgacataattcaatgtaatcaca 37496750  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 9210871 - 9210835
Alignment:
Q  157 atttgagaaaatgacataattcaatgcaatcacatgt 193  Q
    |||||||||||||||||||||||||| ||||||||||    
T  9210871 atttgagaaaatgacataattcaatggaatcacatgt 9210835  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 193
Target Start/End: Complemental strand, 34409384 - 34409352
Alignment:
Q  161 gagaaaatgacataattcaatgcaatcacatgt 193  Q
    |||||||||||||||||||||| ||||||||||    
T  34409384 gagaaaatgacataattcaatgtaatcacatgt 34409352  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 67
Target Start/End: Original strand, 33824442 - 33824472
Alignment:
Q  37 agaattgtttatgaattatgataagccaaat 67  Q
    |||||||||||||||||||||||||||||||    
T  33824442 agaattgtttatgaattatgataagccaaat 33824472  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 193
Target Start/End: Original strand, 10009842 - 10009875
Alignment:
Q  160 tgagaaaatgacataattcaatgcaatcacatgt 193  Q
    ||||||||||||||||||||||| ||||||||||    
T  10009842 tgagaaaatgacataattcaatgtaatcacatgt 10009875  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 19737528 - 19737492
Alignment:
Q  157 atttgagaaaatgacataattcaatgcaatcacatgt 193  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  19737528 atttgagaaaattacataattcaatgcaatcatatgt 19737492  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 190
Target Start/End: Complemental strand, 30080546 - 30080514
Alignment:
Q  158 tttgagaaaatgacataattcaatgcaatcaca 190  Q
    ||||||||||||||||||||||||| |||||||    
T  30080546 tttgagaaaatgacataattcaatgtaatcaca 30080514  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 191
Target Start/End: Original strand, 14332421 - 14332455
Alignment:
Q  157 atttgagaaaatgacataattcaatgcaatcacat 191  Q
    |||||||||||||||||||||||||| ||||||||    
T  14332421 atttgagaaaatgacataattcaatgtaatcacat 14332455  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 26307119 - 26307082
Alignment:
Q  156 tatttgagaaaatgacataattcaatgcaatcacatgt 193  Q
    |||||||||||||||||||||| |||| ||||||||||    
T  26307119 tatttgagaaaatgacataattgaatgaaatcacatgt 26307082  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 31548340 - 31548303
Alignment:
Q  156 tatttgagaaaatgacataattcaatgcaatcacatgt 193  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  31548340 tatttgataaaatgacataattcaatgtaatcacatgt 31548303  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 190
Target Start/End: Original strand, 31119101 - 31119133
Alignment:
Q  158 tttgagaaaatgacataattcaatgcaatcaca 190  Q
    ||||||||||||||||||||||||| |||||||    
T  31119101 tttgagaaaatgacataattcaatgtaatcaca 31119133  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 190
Target Start/End: Original strand, 42874536 - 42874568
Alignment:
Q  158 tttgagaaaatgacataattcaatgcaatcaca 190  Q
    ||||||||||||||||||||||||| |||||||    
T  42874536 tttgagaaaatgacataattcaatgtaatcaca 42874568  T

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