View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16647_low_4 (Length: 606)

Name: NF16647_low_4
Description: NF16647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16647_low_4
NF16647_low_4
[»] chr7 (5 HSPs)
chr7 (248-542)||(22883937-22884248)
chr7 (425-507)||(3367611-3367693)
chr7 (425-480)||(7710916-7710971)
chr7 (103-166)||(22883702-22883765)
chr7 (170-208)||(22883888-22883926)
[»] chr4 (4 HSPs)
chr4 (425-507)||(54188523-54188605)
chr4 (425-507)||(8570573-8570655)
chr4 (426-480)||(28462465-28462519)
chr4 (439-480)||(2550273-2550314)
[»] chr6 (4 HSPs)
chr6 (243-301)||(30947274-30947332)
chr6 (426-480)||(7600004-7600058)
chr6 (435-472)||(12038109-12038146)
chr6 (435-472)||(20654812-20654849)
[»] chr3 (2 HSPs)
chr3 (425-507)||(28696533-28696615)
chr3 (425-480)||(23361688-23361743)
[»] chr8 (1 HSPs)
chr8 (435-486)||(23241019-23241070)
[»] chr5 (1 HSPs)
chr5 (425-480)||(19611249-19611304)
[»] chr2 (1 HSPs)
chr2 (425-480)||(45402101-45402156)
[»] chr1 (1 HSPs)
chr1 (442-486)||(49101208-49101252)


Alignment Details
Target: chr7 (Bit Score: 132; Significance: 3e-68; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 248 - 542
Target Start/End: Original strand, 22883937 - 22884248
Alignment:
Q  248 ctcagaatcttcatcttag--tg--ttccaaatatggaggatattatctcaattcatgatagtttgctgagaagatttcatatatttatctaatcttcat 343  Q
    |||||||||||||||||||  ||  ||||||||||| | |||||| |||  ||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  22883937 ctcagaatcttcatcttaggctggcttccaaatatgaatgatattttctacattcatggtagtttgctgagaagatttcatctatttatctaatcttcat 22884036  T
Q  344 cgaattcggcaatcatca-gaa-----caccttggatgtggca---gca--tttatgtgagtctctcttactcttcttccttttttcctccggcaaggta 432  Q
    |||||||||||| || |  |||     || | | |||||  ||   |||  ||||||||||||||||||||||||||||||||||||||| |||||  ||    
T  22884037 cgaattcggcaa-caccttgaatgtggcagcattgatgttccaatcgcagctttatgtgagtctctcttactcttcttccttttttcctctggcaactta 22884135  T
Q  433 ttattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattttactc---tatgttgcgattgtgtgcttatccaggaatgaggtggatgaact 529  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| |||| ||||||||||||||||||||| |||||||||||||    
T  22884136 ttattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattttactctattattttgcaattgtgtgcttatccaggaattaggtggatgaact 22884235  T
Q  530 gttacttccgtat 542  Q
    |||| ||||||||    
T  22884236 gttatttccgtat 22884248  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 425 - 507
Target Start/End: Complemental strand, 3367693 - 3367611
Alignment:
Q  425 gcaaggtattattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattttactctatgttgcgattgtgtgcttat 507  Q
    |||||||||||||||| ||| | | ||||||||||||||||||||||||||||||| ||| | | |||| |||||||||||||    
T  3367693 gcaaggtattattgtgctgcctatcaggtgtttgataatttgactcaatgaaatttgactgtgttttgcaattgtgtgcttat 3367611  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 425 - 480
Target Start/End: Original strand, 7710916 - 7710971
Alignment:
Q  425 gcaaggtattattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattt 480  Q
    ||||||||| |||||||||| | |||||||||||||||||||||||||||||||||    
T  7710916 gcaaggtatgattgtgttgcatatgaggtgtttgataatttgactcaatgaaattt 7710971  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 103 - 166
Target Start/End: Original strand, 22883702 - 22883765
Alignment:
Q  103 gtcttatagtgacattgcttaaaaaatgttgcatgcacgcatttaaatatatacttcaacattt 166  Q
    ||||||| || ||||| |||||||||||||||||||||  |||| ||||| |||||||||||||    
T  22883702 gtcttatggtaacatttcttaaaaaatgttgcatgcacttattttaatatgtacttcaacattt 22883765  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 208
Target Start/End: Original strand, 22883888 - 22883926
Alignment:
Q  170 atcataaattcttcaccatcatcatcaatcgctcaattc 208  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  22883888 atcatcaattcttcaccatcatcatcaatcgcccaattc 22883926  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 425 - 507
Target Start/End: Complemental strand, 54188605 - 54188523
Alignment:
Q  425 gcaaggtattattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattttactctatgttgcgattgtgtgcttat 507  Q
    |||||||||||||||| ||| | | ||||||| ||||||||||||||||||||||| ||| | | |||| |||||||||||||    
T  54188605 gcaaggtattattgtgctgcctatcaggtgttcgataatttgactcaatgaaatttgactgtgttttgcaattgtgtgcttat 54188523  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 425 - 507
Target Start/End: Original strand, 8570573 - 8570655
Alignment:
Q  425 gcaaggtattattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattttactctatgttgcgattgtgtgcttat 507  Q
    |||||||||||||||| ||| | | ||||||| ||||||||||| ||||||||||| ||| | | |||| |||||||||||||    
T  8570573 gcaaggtattattgtgctgcctatcaggtgttcgataatttgacgcaatgaaatttgactatgttttgcaattgtgtgcttat 8570655  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 426 - 480
Target Start/End: Complemental strand, 28462519 - 28462465
Alignment:
Q  426 caaggtattattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattt 480  Q
    ||||||||||||||||||| |  |||||||||||||| ||| |||||||||||||    
T  28462519 caaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaattt 28462465  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 439 - 480
Target Start/End: Complemental strand, 2550314 - 2550273
Alignment:
Q  439 tgttgcgtgtgaggtgtttgataatttgactcaatgaaattt 480  Q
    |||||| | |||||||||||||||||||||||||||||||||    
T  2550314 tgttgcatatgaggtgtttgataatttgactcaatgaaattt 2550273  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 243 - 301
Target Start/End: Original strand, 30947274 - 30947332
Alignment:
Q  243 tttgcctcagaatcttcatcttagtgttccaaatatggaggatattatctcaattcatg 301  Q
    |||| ||||||||||||||||||| |||||||||||  |||||||| ||||||||||||    
T  30947274 tttgtctcagaatcttcatcttagggttccaaatatcaaggatattttctcaattcatg 30947332  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 426 - 480
Target Start/End: Original strand, 7600004 - 7600058
Alignment:
Q  426 caaggtattattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattt 480  Q
    ||||||||||||||||||| |  |||||||||||||| ||| |||||||||||||    
T  7600004 caaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaattt 7600058  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 472
Target Start/End: Complemental strand, 12038146 - 12038109
Alignment:
Q  435 attgtgttgcgtgtgaggtgtttgataatttgactcaa 472  Q
    |||||||||||| ||| |||||||||||||||||||||    
T  12038146 attgtgttgcgtatgaagtgtttgataatttgactcaa 12038109  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 472
Target Start/End: Original strand, 20654812 - 20654849
Alignment:
Q  435 attgtgttgcgtgtgaggtgtttgataatttgactcaa 472  Q
    |||||||||||| ||| |||||||||||||||||||||    
T  20654812 attgtgttgcgtatgaagtgtttgataatttgactcaa 20654849  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 425 - 507
Target Start/End: Original strand, 28696533 - 28696615
Alignment:
Q  425 gcaaggtattattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattttactctatgttgcgattgtgtgcttat 507  Q
    |||||||||||||||| ||| | | ||||||| ||||||||||| ||||||||||| ||| | | |||| |||||||||||||    
T  28696533 gcaaggtattattgtgctgcctatcaggtgttcgataatttgacgcaatgaaatttgactatgttttgcaattgtgtgcttat 28696615  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 425 - 480
Target Start/End: Original strand, 23361688 - 23361743
Alignment:
Q  425 gcaaggtattattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattt 480  Q
    |||||||||||||||||||| |  |||||||||||||| ||| |||||||||||||    
T  23361688 gcaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaattt 23361743  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 435 - 486
Target Start/End: Original strand, 23241019 - 23241070
Alignment:
Q  435 attgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattttactct 486  Q
    |||||||||| | ||| ||||||||||||||||||||||||||||| |||||    
T  23241019 attgtgttgcatatgaagtgtttgataatttgactcaatgaaatttgactct 23241070  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 425 - 480
Target Start/End: Original strand, 19611249 - 19611304
Alignment:
Q  425 gcaaggtattattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattt 480  Q
    |||||||||||||||||||| |  |||||||||||||| ||| |||||||||||||    
T  19611249 gcaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaattt 19611304  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 425 - 480
Target Start/End: Original strand, 45402101 - 45402156
Alignment:
Q  425 gcaaggtattattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattt 480  Q
    |||||||||||||||||||| |  |||||||||||||| ||| |||||||||||||    
T  45402101 gcaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaattt 45402156  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 442 - 486
Target Start/End: Original strand, 49101208 - 49101252
Alignment:
Q  442 tgcgtgtgaggtgtttgataatttgactcaatgaaattttactct 486  Q
    ||||| ||||||||||||||| | |||||||||||||||||||||    
T  49101208 tgcgtatgaggtgtttgataaatcgactcaatgaaattttactct 49101252  T

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