View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16647_low_5 (Length: 568)
Name: NF16647_low_5
Description: NF16647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16647_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 94 - 549
Target Start/End: Complemental strand, 8845493 - 8845038
Alignment:
| Q |
94 |
aacggtgcaaattctgctgcagagttgaatatcaatatatggccattttcacgaagcaggtctgccggaaacacgacaacccgacccaaattcctcaccg |
193 |
Q |
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| T |
8845493 |
aacggtgcaaattctgctgcagagttgaatatcaatatatggccattttcacgaagcaggtctgccggaaacacgacaacccgacccaaattcttcaccg |
8845394 |
T |
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| Q |
194 |
gagctccggtgacccggaaagttaacagtgcaccttgttctcgtagcaactccgccggagaatcaaagtcgagaaaatggccaagtagtccgggtcgggc |
293 |
Q |
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| T |
8845393 |
gagctccggtgacccggaaagttaacagtgcaccttgttctcgtagcaactccgccggagaatcaaagtcgagaaaatggccaagtagtccgggtcgggc |
8845294 |
T |
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| Q |
294 |
cggtgttcatgtgggtcggaatagtccagtatggcaggttcgtcgcggtggtggaaaaaactcagaccaacaaactcagcaaggttcaaatacagagaaa |
393 |
Q |
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| T |
8845293 |
cggtgttcatgtgggtcggaatagtccagtatggcaggttcgtcgcggtggtggaaaaaactcagaccaacaaactcaacaaggttcaaatacagataaa |
8845194 |
T |
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| Q |
394 |
gaattgaagaaagaagccaccgtgagtcgccggagcaaggtggtttccggtggtggtggaaaagcgaaagttttgagcttgaatgttccgatgtgtattg |
493 |
Q |
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| T |
8845193 |
gaattgaagaaagaagccaccgtgagtcgccggagcaaggtggtttccggtggtggtggaaaagcgaaagttttgagcttgaatgttccgatgtgtattg |
8845094 |
T |
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| Q |
494 |
ggtatagacatcatttgagttgtagaagtgatgagaatagtgctattggtgtgagt |
549 |
Q |
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| T |
8845093 |
ggtatagacatcatttgagttgtagaagtgatgagaatagtgctattggtgtgagt |
8845038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 20651801 - 20651741
Alignment:
| Q |
188 |
tcaccggagctccggtgacccggaaagttaacagtgcaccttgttctcgtagcaactccgc |
248 |
Q |
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| T |
20651801 |
tcaccggaactccggtgacccagaaagttaacagtgcaccttgttctcgtagcaactccgc |
20651741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 189 - 284
Target Start/End: Complemental strand, 55477098 - 55477003
Alignment:
| Q |
189 |
caccggagctccggtgacccggaaagttaacagtgcaccttgttctcgtagcaactccgccggagaatcaaagtcgagaaaatggccaagtagtcc |
284 |
Q |
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||||||||||||||| ||||||||||| |||||||| ||||| || | |||||||| |||||||| |||||||| || || | |||||||||||| |
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| T |
55477098 |
caccggagctccggttacccggaaagtaaacagtgcgccttgctcgaggagcaactctgccggagactcaaagtcaaggaagttgccaagtagtcc |
55477003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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