View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16647_low_7 (Length: 453)
Name: NF16647_low_7
Description: NF16647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16647_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 266 - 441
Target Start/End: Complemental strand, 32376151 - 32375976
Alignment:
| Q |
266 |
tgttatatcataatataagtctaaatttcaaaggcaaccataatttacttgctgctcccatcacgcttggcagaggaggcctcaagtaaatgatttaacc |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32376151 |
tgttatatcataatataagtctaaatttcaaaggcaaccataatttacttgctgctcccatcacgcttggcagaggaggcctcaagtaaatgatttaacc |
32376052 |
T |
|
| Q |
366 |
taataataaatggattaagtatgaaactacttaaagaaccatacaattacagtagatttttaccagaactgatgat |
441 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32376051 |
ttataataaatggattaagtatgaaactacttaaggaaccatacaattacagtagatttttaccagaactaatgat |
32375976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 20 - 319
Target Start/End: Complemental strand, 32364629 - 32364347
Alignment:
| Q |
20 |
ctttttacaagaaaatcatatgaaatacatattaaaatgacatatatgaacttagttttacaatcttaaaatatgtttcttctactgaaactctttgagg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
32364629 |
ctttttacaagaaaatcatatgaaatacatgttagaat----------aacttagttttacaatcttaatgtatgttccttctactgaaactctttgaga |
32364540 |
T |
|
| Q |
120 |
gtagatatattaaatgttgtaacctgtgaatgtaacactattttcattatttgtcctacatgatttatacaaatatgttaaaaacagcttataaatccgt |
219 |
Q |
| |
|
|| ||||||||| ||||| |||||| |||||||||||||| |||||||||| ||||||| || ||||||||||||||||| |||||||||||| |
|
|
| T |
32364539 |
gttgatatattatg-gttgtgacctgt------aacactattttcataatttgtcctaaatgatttgtataaatatgttaaaaacagtttataaatccgt |
32364447 |
T |
|
| Q |
220 |
cacaagttattttcattagttctaatttctaacacacacaagtgcttgttatatcataatataagtctaaatttcaaaggcaaccataatttacttgctg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||| |
|
|
| T |
32364446 |
cacaagttattttcattagttctaatttctaacacacacaagtgcttgttatatcataatataagtctaaatttcaaaggcaactaaaatttacctgctg |
32364347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 32376330 - 32376147
Alignment:
| Q |
20 |
ctttttacaagaaaatcatatgaaatacatattaaaatgacatatatgaactta----gttttacaatcttaaaatatgtttcttctactgaaactcttt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32376330 |
ctttttacaagaaaatcatatgaaatacatattaaaatgacatatatgaacttaattagttttacaatcttaaaatatgttccttctactgaaactcttt |
32376231 |
T |
|
| Q |
116 |
gagggtagatatattaaatgttgtaacctgtgaatgtaacactattttcattatttgtcctacatgatttatacaaatatgtta |
199 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32376230 |
gagggtagatatattaaatgttgtgacctgtgaatgtaacactattttcattatttgccctacatgatttatacaaatatgtta |
32376147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 434
Target Start/End: Complemental strand, 32364303 - 32364244
Alignment:
| Q |
377 |
ggattaagtatgaaactacttaaagaacc--atacaattacagtagatttttaccagaac |
434 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||| |||||| ||||||||||| |
|
|
| T |
32364303 |
ggattaagtatgaaactacttatggaaccatatacaattacggtagatatttaccagaac |
32364244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University