View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16648_high_3 (Length: 328)
Name: NF16648_high_3
Description: NF16648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16648_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 4041911 - 4042219
Alignment:
| Q |
1 |
agaaatgagagtagggtagtggttgatgtaataatccattaattatcaactttgacaacgaatataacttaataatttgtgaaaaccttaattggtgaaa |
100 |
Q |
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| T |
4041911 |
agaaatgagagtagggtagtggttgatgtaataatccattaattatcaactttgacaacgaatataacttaataatttgtgaaaaccttaattggtgaaa |
4042010 |
T |
|
| Q |
101 |
gatgctgactagattgcgatatttttatgagatgaatagtcacaaattattggcccttcaagatcaacatttatgacaacgtaagttgacactacctagc |
200 |
Q |
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| T |
4042011 |
gatgctgactagattgcgatatttttatgagataaatagtcacaaattattggcccttcaagatcaacatttatgacaacgtaagttgacactacctagc |
4042110 |
T |
|
| Q |
201 |
tatcgtgatttggttggcctaatgtcaacatacatctttctttcacaaattgtgctactattattattattaatgtttgaatcgtttccattttgtctct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4042111 |
tatcgtgatttggttggcctaatgtcaacatacatctttctttcacaaattgtgctac---tattattattaatgtttgaatcgtttccattttgtctct |
4042207 |
T |
|
| Q |
301 |
cctatccttctt |
312 |
Q |
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|||||||||||| |
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| T |
4042208 |
cctatccttctt |
4042219 |
T |
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