View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16648_high_6 (Length: 316)
Name: NF16648_high_6
Description: NF16648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16648_high_6 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 43569779 - 43569481
Alignment:
| Q |
18 |
tttccataattccattaatagggtccaagccaaggaccgaacctggattcaccttaggaaaacatacaagtactgttcttattcccacaataacatatgg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43569779 |
tttccataattccattaatagggtccaagccaaggaccgaacctggattcaccttaggaaaacatacaagtactgttcttattcccacaataacatatgg |
43569680 |
T |
|
| Q |
118 |
gagtaattactgttcggtgaacttgaacatgagattatactactacttaagttctatacattaaaacaaccagcaaatggaaaattaaatgtgaaacaat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43569679 |
gagtaattactgttcggtgaacttgaacatgagattatactactacttaagttctatacatcaaaacaaccagcaaatggaaaattaaatgtgaaacaat |
43569580 |
T |
|
| Q |
218 |
taagcattttgctcataatttaattgcatgttaacattacaaattacaactcatattctgcacaaaatgggatttatgatttatctgtgctcctcctca |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
43569579 |
taagcattttgctcataatttaattgcatgttaacattacaaattacaactcatattctgcacaaaatgggatttatgatttatctgtggtcttcctca |
43569481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University