View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16648_low_7 (Length: 269)
Name: NF16648_low_7
Description: NF16648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16648_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 44878821 - 44878581
Alignment:
| Q |
11 |
atgaatagcctgcagaggacaactcttagggagatacaatgttccagtttgtttgtcccaccccggagcgagtttaaagtaactgagagcttaggcaaaa |
110 |
Q |
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| T |
44878821 |
atgaatagcctgcagaggacaactcttaggaagatacaatgttccagtttgtttgtcccaccccggagtgagtttaaagtaactgagagcttaggcaaaa |
44878722 |
T |
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| Q |
111 |
cgggatgaatgatggatgagatggaaaaattaaaaggaccagattaacgcaaaagaaaacatattttaaggttcattaaacgaagnnnnnnntggaacga |
210 |
Q |
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| T |
44878721 |
cgggatgaatgatggatgagatggaaaaattaaaaggaccagattaacgcaaaagaaaacatattttaaggttcattaaacgaagaaaaaaatggaacga |
44878622 |
T |
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| Q |
211 |
gtgtagcagttgatgaactaagccatctactgggagtggtg |
251 |
Q |
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| T |
44878621 |
gtgtagcagttgatgaactaagccatctactgggagtggtg |
44878581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 190
Target Start/End: Original strand, 44879608 - 44879691
Alignment:
| Q |
107 |
aaaacgggatgaatgatggatgagatggaaaaattaaaaggaccagattaacgcaaaagaaaacatattttaaggttcattaaa |
190 |
Q |
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| T |
44879608 |
aaaaagggatgaatgatgaacgagataaaaatattaaaagaaccaaattaatggaaaagaaaacatatcataaggttcattaaa |
44879691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 192
Target Start/End: Complemental strand, 29677566 - 29677386
Alignment:
| Q |
14 |
aatagcctgcagaggacaactcttagggagatacaatgttccagtttgtttgtcccaccccggagcgagtttaaagtaactgagagcttaggcaaaacgg |
113 |
Q |
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| T |
29677566 |
aatagcctgtagaggacaactcttaggaagatacaacgttccagtctgtttgtcccaccttggagtcggtttaaagtacctgggagtttagacaaaatgg |
29677467 |
T |
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| Q |
114 |
gatgaatgatggatgagatggaaa----aattaaaaggaccagattaacgcaaaagaaaacatattttaaggttcattaaacg |
192 |
Q |
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| T |
29677466 |
gatgaatgatgaacgagat--aaattttttttaaaaggatcagattaatgcaaaagaaaacagatcttaaggctcattaaacg |
29677386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 24 - 192
Target Start/End: Complemental strand, 26458754 - 26458584
Alignment:
| Q |
24 |
agaggacaactcttagggagatacaatgttccagtttgtttgtcccaccccggagcgagtttaaagtaactgagagcttaggcaaaacgggatgaatgat |
123 |
Q |
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| T |
26458754 |
agaggacaactcttaggaagatacaacgttccagtctgtttgtcccaccttggagtcggtttaaagtacctgggagtttagacaaaatgggatgaatgat |
26458655 |
T |
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| Q |
124 |
ggatgagatggaaa----aattaaaaggaccagattaacgcaaaagaaaacatattttaaggttcattaaacg |
192 |
Q |
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| T |
26458654 |
gaacgagat--aaattttttttaaaaggatcagattaatgcaaaagaaaacagatcttaaggctcattaaacg |
26458584 |
T |
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