View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16649_high_1 (Length: 627)
Name: NF16649_high_1
Description: NF16649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16649_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 18 - 609
Target Start/End: Complemental strand, 1327680 - 1327073
Alignment:
| Q |
18 |
aaagcattagaacctgagttaagcatggtccgtttttgtagcatgaaaacaagggaaccaaattaaaggagatgtagtgatacatgtattaccctttaga |
117 |
Q |
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| T |
1327680 |
aaagcattagaacctgagttaagcatggtccgtttttgtagcatgaaaacaagggaaccaaa-----ggagatgtagtgatacatgtattaccctttaga |
1327586 |
T |
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| Q |
118 |
aagtatttgactctaattaattatgacattcttggctttgctatattcaccctttgactttttcaatgggttcctattctaattatggatcaatgctaat |
217 |
Q |
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| T |
1327585 |
aagtatttgactctaattaattatgacattcttggctttgctatattcaccctttgactttttcaatgggttcctattctaattatggatcaatgctaat |
1327486 |
T |
|
| Q |
218 |
atattgannnnnnnggtagaatattttatat---------------------tacatgacatttaaacaagaaatgtatcagtaaaaataatataacaat |
296 |
Q |
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| T |
1327485 |
atattgatttttttggtagaatattttatatactgtgtataatcttttaaattacatgacatttaaacaagaaatgtatcagtaaaaataagatcagaat |
1327386 |
T |
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| Q |
297 |
taatatgtgaacatcaattacatatatgcaatcacaatttgacttcaattaaatgctgagcacacacgcctaatgtttccaacagaacctgtctttactc |
396 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1327385 |
taatatgtgaacatcaattacatatatgtaatcacaatttgacttcaattaaatgctgagcacacacgcctaatgtttccaacagaacctgtctttactc |
1327286 |
T |
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| Q |
397 |
caatttgtcccatttttaccatggactgaacaaaatcattttcaaaagaaggtccaaatgttggatttataggattaaagtaggaatcaatgacactctt |
496 |
Q |
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| T |
1327285 |
caatttgtcccatttttaccatggactgaacaaaatcattttcaaaagaaggtccaaatgttggatttataggattgaagtaggaatcaatgacactctt |
1327186 |
T |
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| Q |
497 |
tgttacaaagtcatcattaagtcttgcatcagaagctaacacagcaaaaccttcccttatgtttttcaatatactcttgtcaaatttcagatcactccct |
596 |
Q |
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| T |
1327185 |
tgttacaaagtcatcattaagtcttgcatcagaagctaacacagcaaaaccttcccttatgtttttcaatatactcttgtcaaatttcagatcactccct |
1327086 |
T |
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| Q |
597 |
tcatccatggcta |
609 |
Q |
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| T |
1327085 |
tcatccatggcta |
1327073 |
T |
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