View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16649_low_3 (Length: 325)

Name: NF16649_low_3
Description: NF16649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16649_low_3
NF16649_low_3
[»] chr5 (3 HSPs)
chr5 (1-230)||(9421638-9421867)
chr5 (1-225)||(7289238-7289461)
chr5 (231-275)||(41282676-41282720)
[»] chr1 (6 HSPs)
chr1 (1-230)||(17761080-17761307)
chr1 (1-188)||(45533277-45533464)
chr1 (241-325)||(43882436-43882516)
chr1 (231-288)||(43883424-43883481)
chr1 (241-325)||(9419381-9419466)
chr1 (242-325)||(7384471-7384555)
[»] chr3 (17 HSPs)
chr3 (1-232)||(6765950-6766181)
chr3 (1-230)||(6731065-6731294)
chr3 (1-230)||(53188964-53189192)
chr3 (231-325)||(26538552-26538646)
chr3 (231-325)||(1677355-1677450)
chr3 (231-310)||(27362037-27362116)
chr3 (231-299)||(5385980-5386048)
chr3 (231-288)||(55197939-55197996)
chr3 (231-310)||(27320272-27320351)
chr3 (232-288)||(1678357-1678413)
chr3 (241-303)||(34594636-34594698)
chr3 (231-275)||(25529529-25529573)
chr3 (234-301)||(16196463-16196530)
chr3 (231-288)||(5386830-5386887)
chr3 (131-188)||(19192974-19193031)
chr3 (231-296)||(27319816-27319881)
chr3 (231-287)||(27361546-27361602)
[»] chr2 (8 HSPs)
chr2 (1-230)||(27498457-27498686)
chr2 (1-232)||(29434388-29434618)
chr2 (1-230)||(29446114-29446342)
chr2 (231-325)||(5695961-5696056)
chr2 (241-325)||(31559118-31559203)
chr2 (231-286)||(5694998-5695053)
chr2 (93-188)||(27196673-27196768)
chr2 (235-313)||(42827725-42827804)
[»] chr7 (4 HSPs)
chr7 (1-188)||(11756473-11756660)
chr7 (231-307)||(5975266-5975342)
chr7 (235-313)||(41385379-41385458)
chr7 (234-297)||(44815641-44815704)
[»] chr6 (3 HSPs)
chr6 (20-188)||(15394816-15394982)
chr6 (234-325)||(1134471-1134563)
chr6 (235-313)||(19597549-19597628)
[»] chr4 (5 HSPs)
chr4 (231-313)||(20946233-20946316)
chr4 (231-325)||(2671918-2672014)
chr4 (134-187)||(22754873-22754927)
chr4 (231-288)||(20947236-20947293)
chr4 (231-288)||(2672611-2672668)
[»] chr8 (6 HSPs)
chr8 (241-325)||(7274243-7274328)
chr8 (231-310)||(27410167-27410246)
chr8 (231-310)||(37964221-37964300)
chr8 (231-288)||(7273280-7273337)
chr8 (231-311)||(27410836-27410916)
chr8 (231-307)||(37963678-37963754)


Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 9421638 - 9421867
Alignment:
Q  1 aaatcggagcatgatggaattccatcgtagcccgatattttacgtagcaaaggcttccaaacttgaccaaaaatcgggctacgatgccagaaatcggagc 100  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9421638 aaatcggagcacgatggaattccatcgtagcccaatattttacgtagcaaaggcttccaaacttgaccaaaaatcgggctacgatgccagaaatcggagc 9421737  T
Q  101 acgattttctgcattcttcaagtatcaaaattgttcttttgtagcttcaaacttatgcaaaaacacctgaactcaactagaattacatnnnnnnnctaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  9421738 acgattttctgcattcttcaagtatcaaaattgttcttttgtagcttcaaacttatgcaaaaacacctgaactcaactagaattacataaaaaaactaag 9421837  T
Q  201 ccaaaagtaatgcatgacctagtgtcatca 230  Q
    ||||||||||||||||||||||||||||||    
T  9421838 ccaaaagtaatgcatgacctagtgtcatca 9421867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 7289461 - 7289238
Alignment:
Q  1 aaatcggagcatgatggaattccatcgtagcccgatattttacgtagcaaaggcttccaaacttgaccaaaaatcgggctacgatgccagaaatcggagc 100  Q
    ||||| ||||| ||||| ||||||||| |||||||| |||||||||||||| ||| | ||| | | ||| ||||||||||| ||||| | | ||||||||    
T  7289461 aaatcagagcacgatgggattccatcggagcccgattttttacgtagcaaaagctacaaaattaggccataaatcgggctatgatgcaaaatatcggagc 7289362  T
Q  101 acga-ttttctgcattcttcaagtatcaaaattgttcttttgtagcttcaaacttatgcaaa-aacacctgaactcaactagaattacatnnnnnnncta 198  Q
    |||| |||||| | | |||||||||||||   || |||||| || |||| ||||| |||||| |||| ||||||||||||| ||||||||        |     
T  7289361 acgatttttctacttccttcaagtatcaattctg-tcttttctaacttctaacttgtgcaaacaacatctgaactcaactaaaattacataaaaat--tg 7289265  T
Q  199 agccaaaagtaatgcatgacctagtgt 225  Q
    |||||||||||||||||||||||||||    
T  7289264 agccaaaagtaatgcatgacctagtgt 7289238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 41282676 - 41282720
Alignment:
Q  231 catttccttcaacaatgtgttctcatttcatttgtcaatcatcat 275  Q
    |||||||||||||||||| |||||||| ||||| |||||||||||    
T  41282676 catttccttcaacaatgtcttctcattccatttctcaatcatcat 41282720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 17761307 - 17761080
Alignment:
Q  1 aaatcggagcatgatggaattccatcgtagcccgatattttacgtagcaaaggcttccaaacttgaccaaaaatcgggctacgatgccagaaatcggagc 100  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  17761307 aaatcggagcacgatggaattctatcgtagcccgatattttacgtagcaaaggcttccaaacttgaccaaaaatcgggctacgatgccagaaattggagc 17761208  T
Q  101 acgattttctgcattcttcaagtatcaaaattgttcttttgtagcttcaaacttatgcaaaaacacctgaactcaactagaattacatnnnnnnnctaag 200  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  17761207 acgattttctgctttcttcaagtatcaaaattgttcttttgtaacttcaaacttatgcaaaaacacctgaactcaactagaattacat--aaaaactaag 17761110  T
Q  201 ccaaaagtaatgcatgacctagtgtcatca 230  Q
    |||||||||||| |||||||||||||||||    
T  17761109 ccaaaagtaatggatgacctagtgtcatca 17761080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 45533277 - 45533464
Alignment:
Q  1 aaatcggagcatgatggaattccatcgtagcccgatattttacgtagcaaaggcttccaaacttgaccaaaaatcgggctacgatgccagaaatcggagc 100  Q
    ||||||||||| |||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||| |||| ||||||| ||||    
T  45533277 aaatcggagcacgatgggtttccatcgtagcccgatattttacgtagcaaaagcttccaaacttgaccaaaaattggactacaatgcaagaaatcagagc 45533376  T
Q  101 acgattttctgcattcttcaagtatcaaaattgttcttttgtagcttcaaacttatgcaaaaacacctgaactcaactagaattacat 188  Q
    || |||| |||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45533377 acaatttcctgcttccttcaagtatcaaatttgttcttttgtagcttcaaacttatgcaaaaacacctgaactcaactagaattacat 45533464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 325
Target Start/End: Original strand, 43882436 - 43882516
Alignment:
Q  241 aacaatgtgttctcatttcatttgtcaatcatcatcaaatgagttgccaatatgtggttgca-aaaaattatgatgatgtccatct 325  Q
    |||||||| |||||||| |||||||||||||| ||     |||||||||||||||||||||| ||||||||||| ||||| |||||    
T  43882436 aacaatgtattctcattccatttgtcaatcatgat-----gagttgccaatatgtggttgcagaaaaattatgaggatgttcatct 43882516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 43883481 - 43883424
Alignment:
Q  231 catttccttcaacaatgtgttctcatttcatttgtcaatcatcatcaaatgagttgcc 288  Q
    ||||| |||| ||||||| |||||||||||||| ||| ||||||||||||| ||||||    
T  43883481 cattttcttcgacaatgttttctcatttcatttctcattcatcatcaaatgggttgcc 43883424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 325
Target Start/End: Complemental strand, 9419466 - 9419381
Alignment:
Q  241 aacaatgtgttctcatttcatttgtcaatcatcatcaaatgagttgccaatatgtggttgcaa-aaaattatgatgatgtccatct 325  Q
    |||||||| |||||||| ||||| |||||||||||||| |||||| || |||  ||||| ||| ||||| |||| ||||| |||||    
T  9419466 aacaatgtcttctcattccatttctcaatcatcatcaattgagttccctatacatggttacaacaaaataatgaagatgttcatct 9419381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 325
Target Start/End: Complemental strand, 7384555 - 7384471
Alignment:
Q  242 acaatgtgttctcatttcatttgtcaatcatcatcaaatgagttgccaatatgtggttgcaa-aaaattatgatgatgtccatct 325  Q
    ||||||| |||||||||||||  | | ||||| |||| ||||||||| |||||||  ||||| |||||||||| ||||| |||||    
T  7384555 acaatgtcttctcatttcattgctaattcatcttcaattgagttgcctatatgtgcgtgcaacaaaattatgaggatgttcatct 7384471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 6765950 - 6766181
Alignment:
Q  1 aaatcggagcatgatggaattccatcgtagcccgatattttacgtagcaaaggcttccaaacttgaccaaaaatcgggctacgatgccagaaatcggagc 100  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||| |||||||||||||||| |||||||||||||    
T  6765950 aaatcggagcacgatggaattccatcgtagcccgattttttacgtagcaaaagcttccagacttgaccacaaatcgggctacgatggcagaaatcggagc 6766049  T
Q  101 acgattttctgcattcttcaagtatcaaaattgttcttt-tgtagcttcaaacttatgcaaaaacacctgaactcaactagaattacatnnnnnnnctaa 199  Q
    ||||||| |||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||       ||||    
T  6766050 acgatttcctgcattcttcaagcatcaaaattgttctttctgtggcttcaaacttatgcaaaaacacctgaactcatctagaattacat-aaaaaactaa 6766148  T
Q  200 gccaaaagtaatgcatgacctagtgtcatcaca 232  Q
    |||||||||||||||||||||||||||||||||    
T  6766149 gccaaaagtaatgcatgacctagtgtcatcaca 6766181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 6731294 - 6731065
Alignment:
Q  1 aaatcggagcatgatggaattccatcgtagcccgatattttacgtagcaaaggcttccaaacttgaccaaaaatcgggctacgatgccagaaatcggagc 100  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||| |||||||||||||||| |||||||||||||    
T  6731294 aaatcggagcacgatggaattccatcgtagcccgattttttacgtagcaaaagcttccagacttgaccacaaatcgggctacgatggcagaaatcggagc 6731195  T
Q  101 acgattttctgcattcttcaagtatcaaaattgttcttt-tgtagcttcaaacttatgcaaaaacacctgaactcaactagaattacatnnnnnnnctaa 199  Q
    ||||||| |||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||       ||||    
T  6731194 acgatttcctgcattcttcaagcatcaaaattgttctttctgtggcttcaaacttatgcaaaaacacctgaactcatctagaattacat-aaaaaactaa 6731096  T
Q  200 gccaaaagtaatgcatgacctagtgtcatca 230  Q
    |||||||||||||||||||||||||||||||    
T  6731095 gccaaaagtaatgcatgacctagtgtcatca 6731065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 53189192 - 53188964
Alignment:
Q  1 aaatcggagcatgatggaattccatcgtagcccgatattttacgtagcaaaggcttccaaacttgaccaaaaatcgggctacgatgccagaaatcggagc 100  Q
    ||||||||||| ||| ||| |||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||    
T  53189192 aaatcggagcacgattgaactccatcgtagcccgattttttacgtagcaaaggattccaaacttgaccagaaatcggactacgatgccagaaatcggagc 53189093  T
Q  101 acgattttctgcattcttcaagtatcaaaattgttcttt-tgtagcttcaaacttatgcaaaaacacctgaactcaactagaattacatnnnnnnnctaa 199  Q
    ||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||       ||||    
T  53189092 acgatttcctgcatccttcaagtatcaaaattgttctttctgtagcttcaaacttatgcaaaaacacctgaactcatctagaattacat--aaaaactaa 53188995  T
Q  200 gccaaaagtaatgcatgacctagtgtcatca 230  Q
    |||||||||||||||||| ||||||||||||    
T  53188994 gccaaaagtaatgcatgatctagtgtcatca 53188964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 231 - 325
Target Start/End: Complemental strand, 26538646 - 26538552
Alignment:
Q  231 catttccttcaacaatgtgttctcatttcatttgtcaatcatcatcaaatgagttgccaatatgtggttgcaaaaaattatgatgatgtccatct 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| |||||    
T  26538646 catttccttcaacaatgtgttctcatttcatttgtcaatcatcatcaaatgatttgtcaatatgtggttgcaaaaaattatgaggatgttcatct 26538552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 231 - 325
Target Start/End: Original strand, 1677355 - 1677450
Alignment:
Q  231 catttccttcaacaatgtgttctcatttcatttgtcaatcatcatcaaatgagttgccaatatgtggttgca-aaaaattatgatgatgtccatct 325  Q
    |||||| || |||||||| |||||||| ||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||| ||||| |||||    
T  1677355 catttcattgaacaatgtcttctcattccatttgtcaattatcatcaaatgagttgccaatacgtggttgcagaaaaattatgaggatgttcatct 1677450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 310
Target Start/End: Complemental strand, 27362116 - 27362037
Alignment:
Q  231 catttccttcaacaatgtgttctcatttcatttgtcaatcatcatcaaatgagttgccaatatgtggttgcaaaaaatta 310  Q
    |||||||||||||||||| || ||||||||||| |||||||||||||||||||||||  ||| |||| || |||||||||    
T  27362116 catttccttcaacaatgtcttatcatttcatttctcaatcatcatcaaatgagttgcatataggtgggtgaaaaaaatta 27362037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 231 - 299
Target Start/End: Original strand, 5385980 - 5386048
Alignment:
Q  231 catttccttcaacaatgtgttctcatttcatttgtcaatcatcatcaaatgagttgccaatatgtggtt 299  Q
    |||||| ||||||||||| |||||||||||||| |||||||||||| ||||||||||| || |||||||    
T  5385980 catttcattcaacaatgtcttctcatttcatttatcaatcatcatctaatgagttgcctatttgtggtt 5386048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 55197996 - 55197939
Alignment:
Q  231 catttccttcaacaatgtgttctcatttcatttgtcaatcatcatcaaatgagttgcc 288  Q
    |||||||||||||||||| |||||||| ||||| ||| ||||||||||||||||||||    
T  55197996 catttccttcaacaatgtcttctcattccatttctcattcatcatcaaatgagttgcc 55197939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 310
Target Start/End: Complemental strand, 27320351 - 27320272
Alignment:
Q  231 catttccttcaacaatgtgttctcatttcatttgtcaatcatcatcaaatgagttgccaatatgtggttgcaaaaaatta 310  Q
    |||||||||||||||| | || ||||| ||||| |||||||||||||||||||||||  ||| |||| || |||||||||    
T  27320351 catttccttcaacaatatcttatcattccatttctcaatcatcatcaaatgagttgcatataggtgggtgaaaaaaatta 27320272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 288
Target Start/End: Complemental strand, 1678413 - 1678357
Alignment:
Q  232 atttccttcaacaatgtgttctcatttcatttgtcaatcatcatcaaatgagttgcc 288  Q
    ||||||||||||||||| |||||||| ||||| ||| ||||||| ||||||||||||    
T  1678413 atttccttcaacaatgtcttctcattccatttctcattcatcataaaatgagttgcc 1678357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 303
Target Start/End: Original strand, 34594636 - 34594698
Alignment:
Q  241 aacaatgtgttctcatttcatttgtcaatcatcatcaaatgagttgccaatatgtggttgcaa 303  Q
    |||||||| |||||||||||||| |||| ||||||||| ||||||||| |||| | |||||||    
T  34594636 aacaatgtcttctcatttcatttctcaaccatcatcaattgagttgcctatatatagttgcaa 34594698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 25529573 - 25529529
Alignment:
Q  231 catttccttcaacaatgtgttctcatttcatttgtcaatcatcat 275  Q
    |||||||||||||||||| |||||||| ||||| |||||||||||    
T  25529573 catttccttcaacaatgtcttctcattccatttctcaatcatcat 25529529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 301
Target Start/End: Original strand, 16196463 - 16196530
Alignment:
Q  234 ttccttcaacaatgtgttctcatttcatttgtcaatcatcatcaaatgagttgccaatatgtggttgc 301  Q
    ||||||||||||||| |||| ||| ||  | ||||||||||||| |||| ||||| ||||||||||||    
T  16196463 ttccttcaacaatgtcttcttattccacctctcaatcatcatcatatgacttgcctatatgtggttgc 16196530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 5386887 - 5386830
Alignment:
Q  231 catttccttcaacaatgtgttctcatttcatttgtcaatcatcatcaaatgagttgcc 288  Q
    |||||| ||||| ||||| ||||||||  |||| |||||||||||| |||||||||||    
T  5386887 catttcattcaataatgtcttctcattctatttatcaatcatcatctaatgagttgcc 5386830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 19193031 - 19192974
Alignment:
Q  131 ttgttcttttgtagcttcaaacttatgcaaaaacacctgaactcaactagaattacat 188  Q
    ||||||||||| ||||||||||| ||||| || ||||| |||||||| | ||||||||    
T  19193031 ttgttcttttgcagcttcaaactcatgcataatcacctaaactcaaccaaaattacat 19192974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 27319816 - 27319881
Alignment:
Q  231 catttccttcaacaatgtgttctcatttcatttgtcaatcatcatcaaatgagttgccaatatgtg 296  Q
    |||||||||| | ||||| |||| ||||||||| | | |||||||||||||||||||  |||||||    
T  27319816 catttccttccataatgtcttctgatttcatttctgagtcatcatcaaatgagttgcttatatgtg 27319881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 27361546 - 27361602
Alignment:
Q  231 catttccttcaacaatgtgttctcatttcatttgtcaatcatcatcaaatgagttgc 287  Q
    |||||||||| | |||||  ||| ||||||||| ||| |||||||||||||||||||    
T  27361546 catttccttccataatgtcgtctgatttcatttctcagtcatcatcaaatgagttgc 27361602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 158; Significance: 5e-84; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 27498686 - 27498457
Alignment:
Q  1 aaatcggagcatgatggaattccatcgtagcccgatattttacgtagcaaaggcttccaaacttgaccaaaaatcgggctacgatgccagaaatcggagc 100  Q
    ||||||||||| ||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||    
T  27498686 aaatcggagcacgatggaattacatcgtagcccgattttttacgtagcaaaagcttccaaacttgaccacaaatcgggctacgatggcagaaatcggagc 27498587  T
Q  101 acgattttctgcattcttcaagtatcaaaattgttcttt-tgtagcttcaaacttatgcaaaaacacctgaactcaactagaattacatnnnnnnnctaa 199  Q
    ||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||        |||    
T  27498586 acgatttcctgcattcttcaagcatcaaaattgttctttctgtagcttcaaacttatgcaaaaacacctgaactcatctagaattacataaaaaat-taa 27498488  T
Q  200 gccaaaagtaatgcatgacctagtgtcatca 230  Q
    |||||||||||||||||||||||||||||||    
T  27498487 gccaaaagtaatgcatgacctagtgtcatca 27498457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 29434388 - 29434618
Alignment:
Q  1 aaatcggagcatgatggaattccatcgtagcccgatattttacgtagcaaaggcttccaaacttgaccaaaaatcgggctacgatgccagaaatcggagc 100  Q
    ||||||||||| |||||  |||||||| |||||||| |||||||||||||| ||| | ||| | | ||| |||||||||||||||||   | ||||||||    
T  29434388 aaatcggagcacgatgggcttccatcggagcccgattttttacgtagcaaaagctacaaaattaggccataaatcgggctacgatgctgaatatcggagc 29434487  T
Q  101 acgatttt-ctgcattcttcaagtatcaaaattgttcttttgtagcttcaaacttatgcaaa-aacacctgaactcaactagaattacatnnnnnnncta 198  Q
    |||||||| |||| | |||||||||||||   || |||||||||||||| ||||| |||||| |||||||||||||||||||||||||||       ||     
T  29434488 acgattttcctgcttccttcaagtatcaattctg-tcttttgtagcttctaacttgtgcaaacaacacctgaactcaactagaattacat--aaaaactg 29434584  T
Q  199 agccaaaagtaatgcatgacctagtgtcatcaca 232  Q
    ||||||||||||||||||||||||||||||||||    
T  29434585 agccaaaagtaatgcatgacctagtgtcatcaca 29434618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 29446114 - 29446342
Alignment:
Q  1 aaatcggagcatgatggaattccatcgtagcccgatattttacgtagcaaaggcttccaaacttgaccaaaaatcgggctacgatgccagaaatcggagc 100  Q
    ||||||||||| |||||  |||||||| |||||||| ||||| |||||||| ||| | ||| | | ||| |||||||||||||||||   | ||||||||    
T  29446114 aaatcggagcacgatgggcttccatcggagcccgattttttatgtagcaaaagctacaaaattaggccataaatcgggctacgatgctgaatatcggagc 29446213  T
Q  101 acgatttt-ctgcattcttcaagtatcaaaattgttcttttgtagcttcaaacttatgcaaa-aacacctgaactcaactagaattacatnnnnnnncta 198  Q
    |||||||| |||| | |||||||||||||   || |||||||||||||| |||||||||||| |||| ||||||||||||| ||||||||       ||     
T  29446214 acgattttcctgcttccttcaagtatcaattctg-tcttttgtagcttctaacttatgcaaacaacaactgaactcaactaaaattacat--aaagactg 29446310  T
Q  199 agccaaaagtaatgcatgacctagtgtcatca 230  Q
    ||||||||||||||||||||||| ||||||||    
T  29446311 agccaaaagtaatgcatgacctaatgtcatca 29446342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 231 - 325
Target Start/End: Complemental strand, 5696056 - 5695961
Alignment:
Q  231 catttccttcaacaatgtgttctcatttcatttgtcaatcatcatcaaatgagttgccaatatgtggttgca-aaaaattatgatgatgtccatct 325  Q
    |||||| || |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| |||||    
T  5696056 catttcattgaacaatgtattctcattccatttgtcaatcatcatcaaatgagttgccaatatgtggttgcagaacaattatgaggatgttcatct 5695961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 241 - 325
Target Start/End: Complemental strand, 31559203 - 31559118
Alignment:
Q  241 aacaatgtgttctcatttcatttgtcaatcatcatcaaatgagttgccaatatgtggttgcaa-aaaattatgatgatgtccatct 325  Q
    |||||||| |||||||| ||||| |||||||||||||| ||||||||| |||||||||||||| ||||| |||| ||||| |||||    
T  31559203 aacaatgtcttctcattccatttctcaatcatcatcaattgagttgcctatatgtggttgcaacaaaataatgaggatgttcatct 31559118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 286
Target Start/End: Original strand, 5694998 - 5695053
Alignment:
Q  231 catttccttcaacaatgtgttctcatttcatttgtcaatcatcatcaaatgagttg 286  Q
    |||||||||||||||||| |||||||| ||||| ||| ||||||||||||||||||    
T  5694998 catttccttcaacaatgtcttctcattccatttctcattcatcatcaaatgagttg 5695053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 188
Target Start/End: Original strand, 27196673 - 27196768
Alignment:
Q  93 atcggagcacgattttctgcattcttcaagtatcaaaattgttcttttgtagcttcaaacttatgcaaaaacacctgaactcaactagaattacat 188  Q
    ||||||| |||||||  ||| | ||| |||| |||||  || |||||||||||| ||| ||||||| ||||| ||||||||| |||| ||||||||    
T  27196673 atcggagtacgatttcttgcttccttaaagtgtcaaatctgctcttttgtagctccaaccttatgcgaaaactcctgaactccactaaaattacat 27196768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 313
Target Start/End: Original strand, 42827725 - 42827804
Alignment:
Q  235 tccttcaacaatgtgttctcatttcatttgtcaatcatcatcaaatgagttgccaatatgtggttgcaa-aaaattatga 313  Q
    |||||||||||||| |||| ||| ||||  |||||||||||| |||||||| || || || |||||||| ||||||||||    
T  42827725 tccttcaacaatgtcttctaattccattactcaatcatcatccaatgagttacctatgtgcggttgcaacaaaattatga 42827804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 11756473 - 11756660
Alignment:
Q  1 aaatcggagcatgatggaattccatcgtagcccgatattttacgtagcaaaggcttccaaacttgaccaaaaatcgggctacgatgccagaaatcggagc 100  Q
    ||||| ||||| |||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| ||||||| ||||    
T  11756473 aaatcagagcacgatgggtttccatcgtagcccgatattttacgtagcaaaagcttccaaacttgaccaaaaatcagactacgatgcaagaaatcagagc 11756572  T
Q  101 acgattttctgcattcttcaagtatcaaaattgttcttttgtagcttcaaacttatgcaaaaacacctgaactcaactagaattacat 188  Q
    | ||||| |||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11756573 atgatttcctgcttccttcaagtatcaaatttgttcttttgtagcttcaaacttatgcaaaaacacctgaactcaactagaattacat 11756660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 231 - 307
Target Start/End: Complemental strand, 5975342 - 5975266
Alignment:
Q  231 catttccttcaacaatgtgttctcatttcatttgtcaatcatcatcaaatgagttgccaatatgtggttgcaaaaaa 307  Q
    ||||| |||||||||||| |||||| | ||||||||||||||||||||||||||||  |||||||||||||||||||    
T  5975342 cattttcttcaacaatgtcttctcagtccatttgtcaatcatcatcaaatgagttgttaatatgtggttgcaaaaaa 5975266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 313
Target Start/End: Complemental strand, 41385458 - 41385379
Alignment:
Q  235 tccttcaacaatgtgttctcatttcatttgtcaatcatcatcaaatgagttgccaatatgtggttgcaa-aaaattatga 313  Q
    |||||||||||||| |||| ||| ||||  |||||||||||| |||||||| || || ||||||||||| ||||||||||    
T  41385458 tccttcaacaatgtcttctaattccattactcaatcatcatccaatgagttacctatgtgtggttgcaacaaaattatga 41385379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 297
Target Start/End: Complemental strand, 44815704 - 44815641
Alignment:
Q  234 ttccttcaacaatgtgttctcatttcatttgtcaatcatcatcaaatgagttgccaatatgtgg 297  Q
    ||||||||||||||| |||||||| ||| | |||||| ||||||||||| ||||| ||||||||    
T  44815704 ttccttcaacaatgtcttctcattccatctctcaatcgtcatcaaatgacttgcctatatgtgg 44815641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 20 - 188
Target Start/End: Original strand, 15394816 - 15394982
Alignment:
Q  20 ttccatcgtagcccgatattttacgtagcaaaggcttccaaacttgaccaaaaatcgggctacgatgccagaaatcggagcacgattttctgcattcttc 119  Q
    ||||||| |||||| ||||||||||||| ||| ||| | ||| | |||||||| |||||||||||||| ||  ||| ||||||||||| |||| |  |||    
T  15394816 ttccatcatagcccaatattttacgtagaaaaagctacaaaattagaccaaaa-tcgggctacgatgctagggatccgagcacgatttcctgcttctttc 15394914  T
Q  120 aagtatcaaaattgttcttttgtagcttcaaacttatgcaaaaacacctgaactcaactagaattacat 188  Q
    |||||||||| ||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||    
T  15394915 aagtatcaaatttgttcttttgtagcctctaacttatgc-aaaacacctgaactcaactagaattacat 15394982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 234 - 325
Target Start/End: Original strand, 1134471 - 1134563
Alignment:
Q  234 ttccttcaacaatgtgttctcatttcatttgtcaatcatcatcaaatgagttgccaatatgtggttgc-aaaaaattatgatgatgtccatct 325  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||| ||||||| |||||||||||| |||||||||||| ||||| |||||    
T  1134471 ttccttcaacaatgtcttctcattccatttgtcaatcatcatcaaatcagttgcctatatgtggttgcaaaaaaattatgaggatgttcatct 1134563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 313
Target Start/End: Complemental strand, 19597628 - 19597549
Alignment:
Q  235 tccttcaacaatgtgttctcatttcatttgtcaatcatcatcaaatgagttgccaatatgtggttgcaa-aaaattatga 313  Q
    |||||||||||||| |||| ||| ||||  |||||||||||| |||||||| || || ||||||||||| ||||||||||    
T  19597628 tccttcaacaatgtcttctaattccattactcaatcatcatccaatgagttacctatgtgtggttgcaacaaaattatga 19597549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 231 - 313
Target Start/End: Original strand, 20946233 - 20946316
Alignment:
Q  231 catttccttcaacaatgtgttctcatttcatttgtcaatcatcatcaaatgagttgccaatatgtggttgca-aaaaattatga 313  Q
    |||||| || ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20946233 catttcattgaaccatgtcttctcatttcatttgtcaatcatcatcaaatgagttgccaatatgtggttgcagaaaaattatga 20946316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 231 - 325
Target Start/End: Original strand, 2671918 - 2672014
Alignment:
Q  231 catttccttcaacaatgtgttctcatttcatttgtcaatcatcatcaaatgagttgccaatatgtggttgc--aaaaaattatgatgatgtccatct 325  Q
    |||||| || |||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||  |||||||||||| ||||| |||||    
T  2671918 catttcattgaacaatgtcttctcattccatttgtcaatcatcatcaaatgagttgccaatacgtggttgcagaaaaaattatgaggatgttcatct 2672014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 22754927 - 22754873
Alignment:
Q  134 ttcttttgtagcttcaaacttatgcaaaaacacctgaactcaac-tagaattaca 187  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  22754927 ttcttttgtagcttcaaacttatgcaaaaacacctgaactcaacttagaattaca 22754873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 20947293 - 20947236
Alignment:
Q  231 catttccttcaacaatgtgttctcatttcatttgtcaatcatcatcaaatgagttgcc 288  Q
    ||||| |||||||||||| |||||||||||||| ||| ||||||||||||||||||||    
T  20947293 cattttcttcaacaatgtcttctcatttcatttctcattcatcatcaaatgagttgcc 20947236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 2672668 - 2672611
Alignment:
Q  231 catttccttcaacaatgtgttctcatttcatttgtcaatcatcatcaaatgagttgcc 288  Q
    |||||||||||||||||| |||||||| ||||| ||| ||||||||||||||| ||||    
T  2672668 catttccttcaacaatgtcttctcattccatttctcattcatcatcaaatgagctgcc 2672611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 241 - 325
Target Start/End: Complemental strand, 7274328 - 7274243
Alignment:
Q  241 aacaatgtgttctcatttcatttgtcaatcatcatcaaatgagttgccaatatgtggttgca-aaaaattatgatgatgtccatct 325  Q
    |||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||| | ||||||||||| ||||| |||||    
T  7274328 aacaatgtattctcattccatttgtcaatcatcatcaaatgagttgtcaatatgtggttgtagaaaaattatgaggatgttcatct 7274243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 231 - 310
Target Start/End: Original strand, 27410167 - 27410246
Alignment:
Q  231 catttccttcaacaatgtgttctcatttcatttgtcaatcatcatcaaatgagttgccaatatgtggttgcaaaaaatta 310  Q
    |||||||||||||||||| || ||||| ||||| |||||||||||||||||||||||  ||| |||| || |||||||||    
T  27410167 catttccttcaacaatgtcttatcattccatttctcaatcatcatcaaatgagttgcatataggtgggtgaaaaaaatta 27410246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 231 - 310
Target Start/End: Complemental strand, 37964300 - 37964221
Alignment:
Q  231 catttccttcaacaatgtgttctcatttcatttgtcaatcatcatcaaatgagttgccaatatgtggttgcaaaaaatta 310  Q
    |||||||||||||||||| || ||||| ||||| |||||||||||||||||||||||  ||| |||| || |||||||||    
T  37964300 catttccttcaacaatgtcttatcattccatttctcaatcatcatcaaatgagttgcatataggtgggtgaaaaaaatta 37964221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 288
Target Start/End: Original strand, 7273280 - 7273337
Alignment:
Q  231 catttccttcaacaatgtgttctcatttcatttgtcaatcatcatcaaatgagttgcc 288  Q
    ||||||||||||| |||| |||||||| ||||| ||| ||||||||||||||||||||    
T  7273280 catttccttcaacgatgtcttctcattccatttctcattcatcatcaaatgagttgcc 7273337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 231 - 311
Target Start/End: Complemental strand, 27410916 - 27410836
Alignment:
Q  231 catttccttcaacaatgtgttctcatttcatttgtcaatcatcatcaaatgagttgccaatatgtggttgcaaaaaattat 311  Q
    ||||| |||||| ||||| || | ||||||||| ||| |||||||||||||||||||  |||||||| || ||||||||||    
T  27410916 cattttcttcaataatgtcttatgatttcatttctcagtcatcatcaaatgagttgcttatatgtggatgaaaaaaattat 27410836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 231 - 307
Target Start/End: Original strand, 37963678 - 37963754
Alignment:
Q  231 catttccttcaacaatgtgttctcatttcatttgtcaatcatcatcaaatgagttgccaatatgtggttgcaaaaaa 307  Q
    |||||||||||| ||||| || | ||||||||| ||| |||||||||||||||||||  |||||||| || ||||||    
T  37963678 catttccttcaataatgtcttatgatttcatttctcagtcatcatcaaatgagttgcttatatgtggatgaaaaaaa 37963754  T

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