View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16649_low_6 (Length: 267)

Name: NF16649_low_6
Description: NF16649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16649_low_6
NF16649_low_6
[»] chr4 (4 HSPs)
chr4 (1-264)||(24412885-24413127)
chr4 (26-145)||(24412787-24412906)
chr4 (26-140)||(40414499-40414613)
chr4 (92-140)||(26905350-26905398)
[»] chr8 (4 HSPs)
chr8 (40-182)||(44912663-44912805)
chr8 (26-146)||(44913632-44913752)
chr8 (95-168)||(6414582-6414655)
chr8 (96-164)||(25479794-25479862)
[»] chr6 (1 HSPs)
chr6 (21-100)||(5437824-5437903)
[»] chr1 (5 HSPs)
chr1 (26-100)||(30642664-30642738)
chr1 (26-100)||(30647482-30647555)
chr1 (191-255)||(8531565-8531629)
chr1 (27-90)||(51866493-51866554)
chr1 (93-133)||(51866548-51866588)
[»] scaffold0019 (1 HSPs)
scaffold0019 (92-159)||(59575-59642)
[»] chr3 (2 HSPs)
chr3 (51-133)||(22931753-22931835)
chr3 (92-133)||(36082722-36082763)
[»] chr2 (2 HSPs)
chr2 (95-154)||(38099267-38099326)
chr2 (92-175)||(40497927-40498006)


Alignment Details
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 24412885 - 24413127
Alignment:
Q  1 gtaacaaacttttataccccaaatcattacaacatgccatatataagaggcttattcacattgcttgtttagtaaactatctaaacaaacataacaaact 100  Q
    |||||||||||||||||||||| | ||||| ||||||| |||||||||||||||||||||||||||| |||| ||||||||||| ||||| |||||||||    
T  24412885 gtaacaaacttttataccccaagtgattactacatgccttatataagaggcttattcacattgcttgcttagcaaactatctaaccaaacgtaacaaact 24412984  T
Q  101 tagctagattacctaactaacttggaacaaacttttatactccaacgtgtatattatataccccaacgggtatatagtctaatacaaacttgaattaaca 200  Q
    |||||||||||||||||||||||| ||||||||||||| | ||||||                     |||||||||||||||||||||||||||||||     
T  24412985 tagctagattacctaactaacttgtaacaaacttttatgccccaacg---------------------ggtatatagtctaatacaaacttgaattaacg 24413063  T
Q  201 tattccaacactcttccgtaattcatgtttgctgaatccatcatgcccatcattcatctcagtc 264  Q
     |||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||| ||||    
T  24413064 cattccaacactcttccttaattcatgtttgctgaatccaccatgcccatcattcttctaagtc 24413127  T

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Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 24412787 - 24412906
Alignment:
Q  26 attacaacatgccatatataagaggcttattcacattgcttgtttagtaaactatctaaacaaacataacaaacttagctagattacctaactaacttgg 125  Q
    |||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||     
T  24412787 attacaacgtgccttatataagaggcttattcacattgcttgcttagtaaactatctaaacaaacataacaaacttagttagattacataacttacttgt 24412886  T
Q  126 aacaaacttttatactccaa 145  Q
    ||||||||||||||| ||||    
T  24412887 aacaaacttttataccccaa 24412906  T

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Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 40414499 - 40414613
Alignment:
Q  26 attacaacatgccatatataagaggcttattcacattgcttgtttagtaaactatctaaacaaacataacaaacttagctagattacctaactaacttgg 125  Q
    ||||||||||||| ||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||     
T  40414499 attacaacatgccttatataagaggcttatttacattgcttgcttagtaagctatctaaacaaacataacaaacttagttagattaactaactaacttgt 40414598  T
Q  126 aacaaacttttatac 140  Q
    || |||| |||||||    
T  40414599 aataaacctttatac 40414613  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 26905398 - 26905350
Alignment:
Q  92 taacaaacttagctagattacctaactaacttggaacaaacttttatac 140  Q
    |||||||||||||||||||  |||||||||||| |||||||||||||||    
T  26905398 taacaaacttagctagattttctaactaacttgtaacaaacttttatac 26905350  T

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Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 40 - 182
Target Start/End: Original strand, 44912663 - 44912805
Alignment:
Q  40 tatataagaggcttattcacattgcttgtttagtaaactatctaaacaaacataacaaacttagctagattacctaactaacttggaacaaacttttata 139  Q
    ||||||||| ||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  44912663 tatataagaagcttatttacatcgcttgtttagtaagctatctaaacaaacataacaaacttagctagattacctaactaacttgtaacaaacttttata 44912762  T
Q  140 ctccaacgtgtatattatataccccaacgggtatatagtctaa 182  Q
    | ||||  |||||| ||||||||| ||||||||||||||||||    
T  44912763 ccccaatatgtataatatatacccgaacgggtatatagtctaa 44912805  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 26 - 146
Target Start/End: Original strand, 44913632 - 44913752
Alignment:
Q  26 attacaacatgccatatataagaggcttattcacattgcttgtttagtaaactatctaaacaaacataacaaacttagctagattacctaactaacttgg 125  Q
    |||||| |||||| ||||||| | |||||||||||||||||| ||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||     
T  44913632 attacatcatgccttatataaaaagcttattcacattgcttgcttagtaagctatctaaacaaacataacaaatatagctagattacctaactaacttgt 44913731  T
Q  126 aacaaacttttatactccaac 146  Q
    ||||||||| ||||| |||||    
T  44913732 aacaaacttctataccccaac 44913752  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 6414655 - 6414582
Alignment:
Q  95 caaacttagctagattacctaactaacttggaacaaacttttatactccaacgtgtatattatataccccaacg 168  Q
    ||||||||||| ||||||||||||||||||  |||||||||||||| || | | ||||| ||||| ||||||||    
T  6414655 caaacttagcttgattacctaactaacttgtgacaaacttttatacccccaagggtataatatattccccaacg 6414582  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 25479862 - 25479794
Alignment:
Q  96 aaacttagctagattacctaactaacttggaacaaacttttatactccaacgtgtatattatatacccc 164  Q
    ||||||||||||||| ||||||||||||  ||||||||||||||| || ||  ||||| ||||||||||    
T  25479862 aaacttagctagatttcctaactaacttttaacaaacttttatacccctacaagtataatatatacccc 25479794  T

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Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 5437903 - 5437824
Alignment:
Q  21 aaatcattacaacatgccatatataagaggcttattcacattgcttgtttagtaaactatctaaacaaacataacaaact 100  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  5437903 aaatgattacaacatgccttatataagaggcttattcacattgcttgcttagtaagctatctaaacaaacataacaaact 5437824  T

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Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 30642738 - 30642664
Alignment:
Q  26 attacaacatgccatatataagaggcttattcacattgcttgtttagtaaactatctaaacaaacataacaaact 100  Q
    |||||| |||||| ||||||||||||||||| || |||||||  |||||||||||||||||||||||||| ||||    
T  30642738 attacagcatgccttatataagaggcttatttaccttgcttgcatagtaaactatctaaacaaacataaccaact 30642664  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 30647555 - 30647482
Alignment:
Q  26 attacaacatgccatatataagaggcttattcacattgcttgtttagtaaactatctaaacaaacataacaaact 100  Q
    ||||||||||||| ||||||||||||||||| ||| |||||| ||||||| ||||||||||||||||||| ||||    
T  30647555 attacaacatgccttatataagaggcttatttaca-tgcttggttagtaagctatctaaacaaacataaccaact 30647482  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 8531629 - 8531565
Alignment:
Q  191 tgaattaacatattccaacactcttccgtaattcatgtttgctgaatccatcatgcccatcattc 255  Q
    |||||||||| | | |||||||||||| ||||||||||||| |||||| | ||||||||||||||    
T  8531629 tgaattaacacaattcaacactcttccttaattcatgtttgttgaatcaaccatgcccatcattc 8531565  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 51866493 - 51866554
Alignment:
Q  27 ttacaacatgccatatataagaggcttattcacattgcttgtttagtaaactatctaaacaaac 90  Q
    |||||||||||| |||||| ||  ||||||||| |||||||||||||||   ||||||||||||    
T  51866493 ttacaacatgccttatatagga--cttattcactttgcttgtttagtaagtaatctaaacaaac 51866554  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 133
Target Start/End: Original strand, 51866548 - 51866588
Alignment:
Q  93 aacaaacttagctagattacctaactaacttggaacaaact 133  Q
    ||||||||||||||||| | |||||||||||| ||||||||    
T  51866548 aacaaacttagctagatcatctaactaacttgtaacaaact 51866588  T

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Target: scaffold0019 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 59575 - 59642
Alignment:
Q  92 taacaaacttagctagattacctaactaacttggaacaaacttttatactccaacgtgtatattatat 159  Q
    ||||||||||||| ||||| ||||||||||||| |||||| |||||||| || || ||||||||||||    
T  59575 taacaaacttagcaagatttcctaactaacttgtaacaaatttttatacccccacatgtatattatat 59642  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 133
Target Start/End: Original strand, 22931753 - 22931835
Alignment:
Q  51 cttattcacattgcttgtttagtaaactatctaaacaaacataacaaacttagctagattacctaactaacttggaacaaact 133  Q
    ||||||||  ||||||| ||||||| | |||||||||||| ||||||||||||||| || |||| ||| ||||| ||||||||    
T  22931753 cttattcaatttgcttgcttagtaagcaatctaaacaaacttaacaaacttagctacatcacctgactcacttgtaacaaact 22931835  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 36082763 - 36082722
Alignment:
Q  92 taacaaacttagctagattacctaactaacttggaacaaact 133  Q
    |||||||||||||||||| |||||||||||||| ||||||||    
T  36082763 taacaaacttagctagatcacctaactaacttgtaacaaact 36082722  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 154
Target Start/End: Original strand, 38099267 - 38099326
Alignment:
Q  95 caaacttagctagattacctaactaacttggaacaaacttttatactccaacgtgtatat 154  Q
    |||||||||| ||||| |||||| |||||| ||| ||||||||||| || ||||||||||    
T  38099267 caaacttagcaagatttcctaacaaacttgtaacgaacttttatacccccacgtgtatat 38099326  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 175
Target Start/End: Complemental strand, 40498006 - 40497927
Alignment:
Q  92 taacaaacttagctagattacctaactaacttggaacaaacttttatactccaacgtgtatattatataccccaacgggtatat 175  Q
    ||||||||||||||||||| ||||||||    | ||||||||||||||| || ||| ||||| |||||| ||| || |||||||    
T  40498006 taacaaacttagctagatttcctaacta----gtaacaaacttttatacccccacgagtataatatatatccctacaggtatat 40497927  T

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