View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16649_low_7 (Length: 261)
Name: NF16649_low_7
Description: NF16649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16649_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 24413086 - 24413348
Alignment:
| Q |
1 |
tcatgttttctgaatccatcatgcccatcattcttctaagtctttcaaatgtctctatcttcaatggcttagtcattgcatct-------gcatctcatt |
93 |
Q |
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| T |
24413086 |
tcatgtttgctgaatccaccatgcccatcattcttctaagtctttcaaatgtcactatcttcaatggcttagtcattgcatctgcaatctgcatctcagt |
24413185 |
T |
|
| Q |
94 |
cttgcaatgctccataatcagctttcctttagtaactagctccctaaggaagtgaaatcttgcttctatgtgtttacttattccatgtgacacagggtgc |
193 |
Q |
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|||||||||||||| ||||||||||||||| |||||| | ||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24413186 |
cttgcaatgctccagaatcagctttcctttggtaacttgatccctgaggaagtgaaaccttgcttctatgtgtttacttattccatgtgacacaaggtgc |
24413285 |
T |
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| Q |
194 |
tttgctaactttattgcagattggttatcaactttcagtgtcactgcttcctcctttgcttct |
256 |
Q |
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||| |||||||||||| ||||||||||||||| || |||||||||||||| |||||| ||||| |
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| T |
24413286 |
tttcctaactttattgtagattggttatcaacctttagtgtcactgcttcttcctttccttct |
24413348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 8531597 - 8531507
Alignment:
| Q |
1 |
tcatgttttctgaatccatcatgcccatcattcttctaagtctttcaaatgtctctatcttcaatggcttagtcattgcatctgcatctca |
91 |
Q |
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|||||||| |||||| | ||||||||||||||||||||| || |||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
8531597 |
tcatgtttgttgaatcaaccatgcccatcattcttctaagcctctcaaatgtctctgtcttcaatggcttagttattgcatctgcatctca |
8531507 |
T |
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