View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16649_low_9 (Length: 217)

Name: NF16649_low_9
Description: NF16649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16649_low_9
NF16649_low_9
[»] chr5 (4 HSPs)
chr5 (1-210)||(536910-537119)
chr5 (1-181)||(4557935-4558126)
chr5 (1-66)||(536826-536891)
chr5 (172-208)||(4557883-4557919)
[»] chr7 (7 HSPs)
chr7 (1-210)||(15873882-15874091)
chr7 (1-181)||(21491459-21491650)
chr7 (1-105)||(22077727-22077831)
chr7 (2-66)||(18367412-18367476)
chr7 (2-113)||(48576426-48576538)
chr7 (114-181)||(18367293-18367363)
chr7 (172-210)||(21491405-21491443)
[»] chr3 (8 HSPs)
chr3 (1-210)||(46404508-46404716)
chr3 (1-180)||(5004687-5004874)
chr3 (1-181)||(16975350-16975515)
chr3 (1-74)||(11967971-11968044)
chr3 (174-210)||(5004640-5004676)
chr3 (172-210)||(16975531-16975569)
chr3 (20-72)||(8730913-8730966)
chr3 (20-72)||(9082800-9082853)
[»] chr6 (7 HSPs)
chr6 (1-210)||(34636283-34636486)
chr6 (1-181)||(25005240-25005429)
chr6 (1-181)||(23260544-23260732)
chr6 (1-181)||(32450228-32450417)
chr6 (79-180)||(10751527-10751636)
chr6 (174-210)||(10751480-10751516)
chr6 (172-210)||(23260490-23260528)
[»] scaffold0413 (1 HSPs)
scaffold0413 (1-210)||(8936-9154)
[»] chr1 (7 HSPs)
chr1 (1-181)||(35762015-35762206)
chr1 (62-181)||(37667144-37667271)
chr1 (2-105)||(9537406-9537509)
chr1 (2-72)||(16074808-16074879)
chr1 (172-210)||(37667098-37667136)
chr1 (1-40)||(37667265-37667304)
chr1 (172-210)||(35761961-35761999)
[»] scaffold1838 (1 HSPs)
scaffold1838 (2-105)||(271-374)
[»] chr4 (3 HSPs)
chr4 (1-105)||(28969233-28969337)
chr4 (1-181)||(49499108-49499297)
chr4 (172-210)||(49499313-49499351)
[»] chr2 (1 HSPs)
chr2 (1-56)||(32735391-32735446)


Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 536910 - 537119
Alignment:
Q  1 ctaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||     
T  536910 ctaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatgg 537009  T
Q  101 cattttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtccatgtgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  537010 cattttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtccatgtgg 537109  T
Q  201 atgatgatgt 210  Q
    ||||||||||    
T  537110 atgatgatgt 537119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 4558126 - 4557935
Alignment:
Q  1 ctaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatga 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| || || ||||||||| || ||||||    
T  4558126 ctaaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaatcatattttatataatgtgtgtataataatgttacgtagaatga 4558027  T
Q  101 cattttttctatt--------catatatg--tttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaatat 181  Q
    | ||| || ||||        ||||||||  ||||||||||||||  ||||||||||| || |||| |||||||||||| ||||||||||||    
T  4558026 cttttattttattttgatatgcatatatgtttttttgtggtattgagaaagaagtgttggattttgttgataaactaaagaaatgaaaatat 4557935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 536826 - 536891
Alignment:
Q  1 ctaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  536826 ctaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 536891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 4557919 - 4557883
Alignment:
Q  172 atgaaaatatttcagtttggtccatgtggatgatgat 208  Q
    |||||||||||||| |||||| |||||||||||||||    
T  4557919 atgaaaatatttcattttggttcatgtggatgatgat 4557883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 15874091 - 15873882
Alignment:
Q  1 ctaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||     
T  15874091 ctaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatatctgtatgataatgttttgtggaatgg 15873992  T
Q  101 cattttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtccatgtgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15873991 cattttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtccatgtgg 15873892  T
Q  201 atgatgatgt 210  Q
    ||||||||||    
T  15873891 atgatgatgt 15873882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 21491650 - 21491459
Alignment:
Q  1 ctaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatga 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||| ||||||    
T  21491650 ctaaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtgtgcat-aaaatgttatgtagaatga 21491552  T
Q  101 cattttttctatt--------catatatg---tttttgtggtatt-gtaaagaagtgttagactttgctgataaactaaataaatgaaaatat 181  Q
    ||||| || ||||        ||||||||   ||||||||||||| | ||||||||||| || |||| |||||||||||| ||||||||||||    
T  21491551 catttattttattttgatatgcatatatgttttttttgtggtattgggaaagaagtgttggattttgttgataaactaaagaaatgaaaatat 21491459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 22077727 - 22077831
Alignment:
Q  1 ctaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatga 100  Q
    ||||||||| |||| |||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||    
T  22077727 ctaaaatataaatttatatggtaaaatttaaccatttcaaaaagttattagtttaattatattttatatgatgtgtgtatgataatgttatgtagaatga 22077826  T
Q  101 cattt 105  Q
    |||||    
T  22077827 cattt 22077831  T

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Target: chr7; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 18367476 - 18367412
Alignment:
Q  2 taaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 66  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18367476 taaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 18367412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 113
Target Start/End: Original strand, 48576426 - 48576538
Alignment:
Q  2 taaaatatgaattcatatggtaaaatttaaccttttataaaagttattagttt-aattatattttatatgatgtctgcatgataatgttatgtggaatga 100  Q
    ||||||||||||| ||||||||||||||||  | |||| |||||||||||||| |||||||| ||||||||||| || |||||||||| |||  ||||||    
T  48576426 taaaatatgaatttatatggtaaaatttaatatcttattaaagttattagttttaattatatattatatgatgtgtgtatgataatgtgatgcagaatga 48576525  T
Q  101 cattttttctatt 113  Q
    ||||| |||||||    
T  48576526 catttattctatt 48576538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 18367363 - 18367293
Alignment:
Q  114 catatatgttttt--gtggtattgt-aaagaagtgttagactttgctgataaactaaataaatgaaaatat 181  Q
    |||||||||||||  |||||||||  ||||||||||| || |||| |||||||||||| ||||||||||||    
T  18367363 catatatgtttttttgtggtattgggaaagaagtgttggattttgttgataaactaaagaaatgaaaatat 18367293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 21491443 - 21491405
Alignment:
Q  172 atgaaaatatttcagtttggtccatgtggatgatgatgt 210  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  21491443 atgaaaatatttcattttggttcatgtggatgatgatgt 21491405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 46404716 - 46404508
Alignment:
Q  1 ctaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||     
T  46404716 ctaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatatctgtatgataatgttttgtggaatgg 46404617  T
Q  101 cattttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtccatgtgg 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46404616 cattttt-ctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtccatgtgg 46404518  T
Q  201 atgatgatgt 210  Q
    ||||||||||    
T  46404517 atgatgatgt 46404508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 5004874 - 5004687
Alignment:
Q  1 ctaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatga 100  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5004874 ctaaaatatgaatttatatggtgaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatga 5004775  T
Q  101 cat--------tttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaata 180  Q
    |||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5004774 catttattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaata 5004687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 16975350 - 16975515
Alignment:
Q  1 ctaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  16975350 ctaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataattttatgtggaatga 16975449  T
Q  101 cattttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaatat 181  Q
    | |                |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16975450 cgt----------------tgtttttgtggtattgttaaagaagtgttagactttgctgataaactaaataaatgaaaatat 16975515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 11968044 - 11967971
Alignment:
Q  1 ctaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgt 74  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11968044 ctaaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaattatattttatacgatgt 11967971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 5004676 - 5004640
Alignment:
Q  174 gaaaatatttcagtttggtccatgtggatgatgatgt 210  Q
    |||||||||||||||||||||||||||||||||||||    
T  5004676 gaaaatatttcagtttggtccatgtggatgatgatgt 5004640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 210
Target Start/End: Original strand, 16975531 - 16975569
Alignment:
Q  172 atgaaaatatttcagtttggtccatgtggatgatgatgt 210  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  16975531 atgaaaatatttcagtttggttcatgtggatgatgatgt 16975569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 8730913 - 8730966
Alignment:
Q  20 ggtaaaatttaaccttttataaaagttattagtt-taattatattttatatgat 72  Q
    |||||||||||| |||||||||||||||||| || | ||||| |||||||||||    
T  8730913 ggtaaaatttaatcttttataaaagttattaattctcattatgttttatatgat 8730966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 9082800 - 9082853
Alignment:
Q  20 ggtaaaatttaaccttttataaaagttattagtt-taattatattttatatgat 72  Q
    |||||||||||| |||||||||||||||||| || | ||||| |||||||||||    
T  9082800 ggtaaaatttaatcttttataaaagttattaattctcattatgttttatatgat 9082853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 179; Significance: 9e-97; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 34636283 - 34636486
Alignment:
Q  1 ctaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  34636283 ctaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggcatga 34636382  T
Q  101 cattttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtccatgtgg 200  Q
    ||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34636383 cattttttctattcatatatgtttttgtggtatt------aagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtccatgtgg 34636476  T
Q  201 atgatgatgt 210  Q
    ||||||||||    
T  34636477 atgatgatgt 34636486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 25005240 - 25005429
Alignment:
Q  1 ctaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatga 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  25005240 ctaaaataagaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataattttatgtggaatga 25005339  T
Q  101 cat--------tttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaatat 181  Q
    |||        |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25005340 catttattttatttttctattcatatatgtttttgtggtattgttaaagaagtgttagactttgctgataaactaaataaatgaaaatat 25005429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 23260732 - 23260544
Alignment:
Q  1 ctaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatga 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  23260732 ctaaaatatgaattcatatggtaaaatttagccttttataaaagttattagtttaattatattttatatgatgtttgtatgataatgttatgtggaatga 23260633  T
Q  101 cat--------tttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaatat 181  Q
    |||        |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  23260632 catttattttatttttctattcatatatgtttttgtggtattgttaaagaagtgttaga-tttgctgataaactaaataaatgaaaatat 23260544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 32450417 - 32450228
Alignment:
Q  1 ctaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatga 100  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  32450417 ctaaaatatgaattcatatggtaaattttaactttttataaaagttattagtttaattatattttatatgatgtgtgtatgataatgttatgtggaatga 32450318  T
Q  101 cat--------tttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaatat 181  Q
    |||        ||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  32450317 catttattttatttttctatgcatatatgtttttgtggtattgttaaagaagtgttagactttgttgataaactaaataaatgaaaatat 32450228  T

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Target: chr6; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 79 - 180
Target Start/End: Complemental strand, 10751636 - 10751527
Alignment:
Q  79 atgataatgttatgtggaatgacattt--------tttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaata 170  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10751636 atgataatgttatgtggaatgacatttattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaata 10751537  T
Q  171 aatgaaaata 180  Q
    ||||||||||    
T  10751536 aatgaaaata 10751527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 10751516 - 10751480
Alignment:
Q  174 gaaaatatttcagtttggtccatgtggatgatgatgt 210  Q
    |||||||||||||||||||||||||||||||||||||    
T  10751516 gaaaatatttcagtttggtccatgtggatgatgatgt 10751480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 23260528 - 23260490
Alignment:
Q  172 atgaaaatatttcagtttggtccatgtggatgatgatgt 210  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  23260528 atgaaaatatttcagtttggttcatgtggatgatgatgt 23260490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 8936 - 9154
Alignment:
Q  1 ctaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatga 100  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8936 ctaaaatatgaattcacatggtaaaatttaaccttttataacagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatga 9035  T
Q  101 cattt---------tttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagtttgg 191  Q
    |||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9036 catttattttattttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagattgg 9135  T
Q  192 tccatgtggatgatgatgt 210  Q
    |||||||||||||||||||    
T  9136 tccatgtggatgatgatgt 9154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 8e-57; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 35762206 - 35762015
Alignment:
Q  1 ctaaaatatgaattcatatggtaaaatttaaccttttataaaa--gttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaat 98  Q
    |||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||| || ||||||||||||||||||||    
T  35762206 ctaaaatatgaatttatatggtaaaatttaaccttttataaaaaagttattagtttaactatattttatatgatgtgtgtatgataatgttatgtggaat 35762107  T
Q  99 gacat--------tttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaatat 181  Q
    |||||        ||||||||| |||||||||||||||||||||| ||| ||||||||||||||||  ||||||||||||||||||||||||    
T  35762106 gacatttattttatttttctatgcatatatgtttttgtggtattgttaatgaagtgttagactttgtagataaactaaataaatgaaaatat 35762015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 62 - 181
Target Start/End: Complemental strand, 37667271 - 37667144
Alignment:
Q  62 ttttatatgatgtctgcatgataatgttatgtggaatgacattt--------tttctattcatatatgtttttgtggtattgtaaagaagtgttagactt 153  Q
    |||||||||||||||| ||||||||||||||||||||||| |||        ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37667271 ttttatatgatgtctgtatgataatgttatgtggaatgacttttattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactt 37667172  T
Q  154 tgctgataaactaaataaatgaaaatat 181  Q
    ||||||||||||||||||||||||||||    
T  37667171 tgctgataaactaaataaatgaaaatat 37667144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 9537509 - 9537406
Alignment:
Q  2 taaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgac 101  Q
    |||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||    
T  9537509 taaaatataaatttatattgtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtttgtatgataatgttatgtagaatgac 9537410  T
Q  102 attt 105  Q
    ||||    
T  9537409 attt 9537406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 16074808 - 16074879
Alignment:
Q  2 taaaatatgaattcatatggtaaaatttaaccttttataaaagttattag-tttaattatattttatatgat 72  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  16074808 taaaatatgaattcatatgttaaaatttaatcttttataaaagttattagatttaattatattttatatgat 16074879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 37667136 - 37667098
Alignment:
Q  172 atgaaaatatttcagtttggtccatgtggatgatgatgt 210  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37667136 atgaaaatatttcagtttggtccatgtggatgatgatgt 37667098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 37667304 - 37667265
Alignment:
Q  1 ctaaaatatgaattcatatggtaaaatttaaccttttata 40  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  37667304 ctaaaatatgaattcatatgataaaatttaaccttttata 37667265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 35761999 - 35761961
Alignment:
Q  172 atgaaaatatttcagtttggtccatgtggatgatgatgt 210  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  35761999 atgaaaatatttcattttggttcatgtggatgatgatgt 35761961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 271 - 374
Alignment:
Q  2 taaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgac 101  Q
    |||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||| |    
T  271 taaaatataaatctatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtgtgtatgataatgttatgtagaatgcc 370  T
Q  102 attt 105  Q
    ||||    
T  371 attt 374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 28969337 - 28969233
Alignment:
Q  1 ctaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatga 100  Q
    ||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| || |||||||| |||||| ||||||    
T  28969337 ctaaaatattaatttatatggtaaaatttaacattttataaaagttattagtttaattatattctatatgatgtgtgtatgataattttatgtagaatga 28969238  T
Q  101 cattt 105  Q
    |||||    
T  28969237 cattt 28969233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 49499108 - 49499297
Alignment:
Q  1 ctaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatga 100  Q
    |||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||| || || |  |||||| || ||||||    
T  49499108 ctaaaatatgaatttatatagtaaaatttaaccttttataaaaattattagtttaattatattttatataatgtgtgtat-aagatgttacgtagaatga 49499206  T
Q  101 cattttttctatt--------catatatg-tttttgtggtatt-gtaaagaagtgttagactttgctgataaactaaataaatgaaaatat 181  Q
    ||||| || ||||        |||||||| ||||||||||||| | ||||||||||| || |||| |||||||||||| ||||||||||||    
T  49499207 catttattttattttgatatgcatatatgttttttgtggtattgggaaagaagtgttggattttgttgataaactaaagaaatgaaaatat 49499297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Original strand, 49499313 - 49499351
Alignment:
Q  172 atgaaaatatttcagtttggtccatgtggatgatgatgt 210  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  49499313 atgaaaatatttcattttggttcatgtggatgatgatgt 49499351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 32735446 - 32735391
Alignment:
Q  1 ctaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaa 56  Q
    |||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||    
T  32735446 ctaaaatatgcattcatatggtgaaatttaaccttttataaaagatattagtttaa 32735391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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