View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16650_low_1 (Length: 536)
Name: NF16650_low_1
Description: NF16650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16650_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 443; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 16 - 520
Target Start/End: Complemental strand, 33029164 - 33028650
Alignment:
| Q |
16 |
cttaattcattgtacatccttttacacgtagtttctgtcaaagtaagcttatcatagtgttgaacctcttttatggtcttaccttctgattctaatatga |
115 |
Q |
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| T |
33029164 |
cttaattcattgtacatccttttacatgtagtttctgtcaaagtaagcttatcatagtgttgaacctcttttatggtcttaccttctgattctaatagga |
33029065 |
T |
|
| Q |
116 |
ccagagagggattgatcgagtaaagcaaccttctatcagaataggaaaccaaataaagggacagaattgtgacttgggttcttcaaatttttcaaaccat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33029064 |
taagagagggattgatcgagtaaagcaaccttctatcagaataggaaaccaaataaagggacagaattgtgacttgggttcttcaaatttttcaaaccat |
33028965 |
T |
|
| Q |
216 |
ttttcagctttttgattatatgcttctgttagaacaatacttatcaggaaagggaggttggtttagtttggaaaaccatcagaagaaatgaagtagttcc |
315 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
33028964 |
ttttcagctttttgattctatgcttctgttagaacaatacttatcaggaaagggagcttggtttactttggaaaaccatcagaagaaatgaagcagttcc |
33028865 |
T |
|
| Q |
316 |
tatagtagacatttgctaatggaaacataactgat-------gtatccttatacaatcagatttggaggataaagtgcaaacgggaaatgcagaagttga |
408 |
Q |
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| T |
33028864 |
tatagtagacatttgctaatggaaacataactgatgtatgatgtatccttatacaatcagatttggaggataaagtgcaaacgggaaatgcagaagttga |
33028765 |
T |
|
| Q |
409 |
aacataaaatggaaaccgttaaatgacttattatttagtttaataagtatacatgatacaaaaggtatacatgac---ttattaaacagaactaacatca |
505 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33028764 |
aacataaaatggaaaccgttaaatgacttattatttagtttaataagtatacatgatacaaaaggtatacatgacttattattaaacagaactaacatca |
33028665 |
T |
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| Q |
506 |
catctcccctctttg |
520 |
Q |
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| T |
33028664 |
catctcccctctttg |
33028650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 33040512 - 33040433
Alignment:
| Q |
53 |
tcaaagtaagcttatcatagtgttgaacctcttttatggtcttaccttctgattctaatatgaccagagagggattgatc |
132 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
33040512 |
tcaaagtaagcctatcatagtgttgaacctcttttatggtcttaccttctgattctaatagtacaagagagggattgatc |
33040433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 33022918 - 33022839
Alignment:
| Q |
53 |
tcaaagtaagcttatcatagtgttgaacctcttttatggtcttaccttctgattctaatatgaccagagagggattgatc |
132 |
Q |
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| T |
33022918 |
tcaaagtaagcctatcatagtgttgaacctcttttatggtcatactttctgattctaataggataagagatggattgatc |
33022839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 486 - 520
Target Start/End: Complemental strand, 33040146 - 33040112
Alignment:
| Q |
486 |
attaaacagaactaacatcacatctcccctctttg |
520 |
Q |
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| T |
33040146 |
attaaacaggactaacatcacatctcccctctttg |
33040112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 423
Target Start/End: Original strand, 24127269 - 24127362
Alignment:
| Q |
328 |
ttgctaatggaaacataactgatgtatccttatacaatcagatttggaggataaagtgcaaacgggaaatgcagaagttgaaacataaaatggaaa |
423 |
Q |
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||||||||||||| |||| |||||| || | ||| ||| || ||||||||||||||||||| |||||||||| |||||||||||| ||||||| |
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| T |
24127269 |
ttgctaatggaaatataaatgatgtttc--tgtaccatcggagttggaggataaagtgcaaattggaaatgcagcagttgaaacatatcatggaaa |
24127362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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