View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16650_low_2 (Length: 477)
Name: NF16650_low_2
Description: NF16650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16650_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Complemental strand, 298349 - 297896
Alignment:
| Q |
1 |
gtcataatgacatgtttctgaacacaatctcatcaatatcatcttcactaaccatcaataacagagtgtacaataataccggtactagaagtaaatcaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| | || |
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| T |
298349 |
gtcataatgacatgtttctgaacacaatctcatcaatatcatcttcactaactatcaataacagagtgtacaataagaccggtactagaagtga----ga |
298254 |
T |
|
| Q |
101 |
ttgnnnnnnntaaataaataaaggaatcactatagagttgcaatcaccatggagaacttctggaaccaagaaatcaaaatcaaatattttgagaaaagtt |
200 |
Q |
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| T |
298253 |
ttgaaaaaaataaataaaaaaaggaatcactatagagttgcaatcaccatggagaacttctggaaccaagaaatcaaaatcaaatattttgagaaaagtt |
298154 |
T |
|
| Q |
201 |
ttgttatcactaaaaatattttttctattcaaatcccttaaaagacttgtattgattaaatgatcctcaagcaacttggcaagnnnnnnngaattataca |
300 |
Q |
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| T |
298153 |
ttgttatcactaaaaatattttttctattcaaatcccttaaa-ga----tattgattaaatgatcctcaagcaactgggcaagaaaaaaagaattataca |
298059 |
T |
|
| Q |
301 |
tatagaatatacagttaaatatgatagtcacccaccaccataatgaatgaaacaatgaattgatttttacttattattagtcctcatgctaattatatat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
298058 |
tatagaatatacagttaaatatgatagtcacccaccaccataatgaatgaaacaatgaattgatttttacttattattagtcctcatgataattatatat |
297959 |
T |
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| Q |
401 |
gctagtgcctgcgattgcgaaggttgttgttggcagtgacatgagcagcagtgttgttgttag |
463 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
297958 |
gctagtgcctgcgattgcgaaggttgttgttggcagtgacatgagcagcagtgttgtttttag |
297896 |
T |
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