View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16650_low_3 (Length: 369)
Name: NF16650_low_3
Description: NF16650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16650_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 301
Target Start/End: Original strand, 19937100 - 19937383
Alignment:
| Q |
18 |
aaattttcctcttgggagggaacatgctgctgacttgaattttgaagaggtagagtttctactgcagaagtaggccgagagagttgttgttgtggctgag |
117 |
Q |
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||||||||| | | |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||| |||||||||||||||| |
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| T |
19937100 |
aaattttccacctcggagggaacatgctgctgacttgaattttgaagaggtagagtttttgctgcagaagtaggccgatagagctgttgttgtggctgag |
19937199 |
T |
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| Q |
118 |
attgcaagttggttagctctgtaaagaccggacttgagtgctgagtcggaatagcttcctctgtagcagctggccgagaaacaggttgttggaaggctgc |
217 |
Q |
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||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
19937200 |
attgcaagttggttagctctgtagggatcagacttgagtgctgagtcggaatagcttcctctgtagcagctggccgagaaataggttgttggaaagctgc |
19937299 |
T |
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| Q |
218 |
agatgagcctatacctgaagggttatccttaagaggaacccattcagtcctctgtgttggcatttgcttcttaccctgagcaac |
301 |
Q |
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| T |
19937300 |
agatgagcctatacctgaagggttgtccttaagaggaacccattcagtcctctgtgttggcatttgcttcttaccctgagcaac |
19937383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 319 - 359
Target Start/End: Original strand, 19937419 - 19937459
Alignment:
| Q |
319 |
gtggatgaatccaccgacaaactgaaacatgatgccctatg |
359 |
Q |
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| T |
19937419 |
gtggatgaatccaccgacaaactgaaatatgatgccctatg |
19937459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 8479086 - 8478801
Alignment:
| Q |
18 |
aaattttcctcttgggagggaacatgctgctgacttgaattttgaagaggtagagtttctactgcagaagtaggccgagagagttgttgttgtggctgag |
117 |
Q |
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| T |
8479086 |
aaattttcctcctcggagggaacatgctgctgatttgaattttgaagaggtagagtttctgctgcagaagtaggccgagagagttgttattgtggctgag |
8478987 |
T |
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| Q |
118 |
attgcaagttggttagctctgtaaagaccggacttgagtgctgagtcggaatagcttcctctgtagcagctggccgagaaacaggttgttggaaggctgc |
217 |
Q |
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||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8478986 |
attgcaagttggttagctctgtagggactggacttgagttctgagtcggaatagcttccttggtagcagctggccgagaaacaggttgttggaaggctgc |
8478887 |
T |
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| Q |
218 |
agatgagcctatacctgaagggttatccttaagaggaacccattc---agtcctctgtgttggcatttgcttcttaccctgagcaa |
300 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||| |
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| T |
8478886 |
agatgagcctatacctgaagggttgtccttaagaggaacccattcatgagtcctctgtgttggcattggcttcttcccctgagcaa |
8478801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 319 - 359
Target Start/End: Complemental strand, 8478764 - 8478724
Alignment:
| Q |
319 |
gtggatgaatccaccgacaaactgaaacatgatgccctatg |
359 |
Q |
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| T |
8478764 |
gtggatgaatccaccgacaaactgaaatatgatgccctatg |
8478724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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