View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16651_high_10 (Length: 280)
Name: NF16651_high_10
Description: NF16651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16651_high_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 8877486 - 8877738
Alignment:
| Q |
18 |
agatgaaactagtttgattagcttatctttgaaaattatccttggagattgttttgttttgccaataaatgcgaaagtactcgtgaaagttatcttccac |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
8877486 |
agatggaactagtttgattagcttatctttgaaaattatccttggagattgttttgttttgcgaataaatgcgaaagtactcatgaaagttgtcttccac |
8877585 |
T |
|
| Q |
118 |
atcgagttgggatctccattccaatacttgttgaggttaagaaaaacctagttcatgcaatcaaaataaaagaagccaatcatctagtcaaaaggtataa |
217 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8877586 |
ctcgagttgggatctcgattccaatacttgttaaggttaagaaaaacctagttcatgcaatcaaaataaaagaagccaatcatctagtcaaaaggtacaa |
8877685 |
T |
|
| Q |
218 |
gtatgatccctacctgagttgcatacatgcagtctctgagaacattaagaata |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8877686 |
gtatgatccctacctgagttgcatacatgcagtctctgagaacattaaaaata |
8877738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 267
Target Start/End: Original strand, 41550525 - 41550779
Alignment:
| Q |
20 |
atgaaactagtttgattagcttatctttgaaaattatccttggagattgttttgttttgccaat-----aaatgcgaa--agtactcgtgaaagttatct |
112 |
Q |
| |
|
|||| ||||||| |||||||| ||||||||||||||||| | |||||||| ||| |||||| |||||| || |||| || |||||||| ||| |
|
|
| T |
41550525 |
atgacactagttggattagctggtctttgaaaattatcctcaaaaattgttttatttcgccaattccacaaatgctaacaagtagtcatgaaagttgtct |
41550624 |
T |
|
| Q |
113 |
tccacatcgagttgggatctccattccaatacttgttgaggttaagaaaaacctagttcatgcaatcaaaataaaagaagccaatcatctagtcaaaagg |
212 |
Q |
| |
|
||||| | |||| ||| |||||||||| |||| | |||||| ||||||| | ||| ||||||||||| ||||||| |||| ||| | ||| |||| |
|
|
| T |
41550625 |
tccacctaaagttaggaatgccattccaatgcttgctaaggttattaaaaacccaattcctgcaatcaaaagtaaagaagtcaattatccaatcagaagg |
41550724 |
T |
|
| Q |
213 |
tataagtatgatccctacctgagttgcatacatgcagtctctgagaacattaaga |
267 |
Q |
| |
|
| |||| |||||| |||||||||||||||||||| |||||| |||||| |||| |
|
|
| T |
41550725 |
aacaagtctgatccaaacctgagttgcatacatgcaatctctgggaacatgaaga |
41550779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 267
Target Start/End: Original strand, 54908855 - 54908913
Alignment:
| Q |
209 |
aaggtataagtatgatccctacctgagttgcatacatgcagtctctgagaacattaaga |
267 |
Q |
| |
|
|||||| |||| |||||| ||||||||||||||| ||||||||||||| |||| |||| |
|
|
| T |
54908855 |
aaggtacaagtctgatccatacctgagttgcataagtgcagtctctgagtacatgaaga |
54908913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University