View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16651_low_1 (Length: 1083)
Name: NF16651_low_1
Description: NF16651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16651_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 123; Significance: 1e-62; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 654 - 796
Target Start/End: Complemental strand, 27732978 - 27732836
Alignment:
| Q |
654 |
tttgaatctgatggattggctgctaagcttgctagtgctgacagctctttacttattggatcatatctggatgtacctattggacaagaaattaaaaatg |
753 |
Q |
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| T |
27732978 |
tttgaatctgatggattggctgctaagctggcaagtgccgacagctctttacttattggatcatatctggatgtacctattggacaagaaattaaaaatg |
27732879 |
T |
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| Q |
754 |
caggtaagcttttgtacatgatattattaaattattaaaatac |
796 |
Q |
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| T |
27732878 |
caggtaagcttttgtccgtgatattattaaattattaaaatac |
27732836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 482 - 597
Target Start/End: Original strand, 27733094 - 27733209
Alignment:
| Q |
482 |
atgttaatctgttcagaacttccttgcaacttcccaaagtaaaaatctctccccacttcatccaccttctcttttatataagcccttgcatcaccgattt |
581 |
Q |
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| T |
27733094 |
atgttattctgttcagaacttccttgcaacttccccaagtaaaaagctctccccacttcatccacctgctcttttatataagcccttgcatcaccaattt |
27733193 |
T |
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| Q |
582 |
ctagcttactcttttc |
597 |
Q |
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| T |
27733194 |
ctggctttctcttttc |
27733209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 400 - 480
Target Start/End: Original strand, 27732986 - 27733066
Alignment:
| Q |
400 |
ctccaattaatagtcaacagcttatcttctgagttaattttcacaggaggaagccttggataatcttccttctgcttctcc |
480 |
Q |
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| T |
27732986 |
ctccaattaatagtcaacggcttatcttctgacttaattttcacaggaggaagccttggatactcttccttctgcttctcc |
27733066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 221 - 324
Target Start/End: Complemental strand, 27733731 - 27733627
Alignment:
| Q |
221 |
attaatggtcctgtggagccttaccaaactgacggtggaagcaaggctagtaatacttcgaatg-atcaatatctcagcaataaaaaactcaaatgagtg |
319 |
Q |
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| T |
27733731 |
attaatggtcctgcagagccttgccaaaatgacggtgcaagcaaggctagtaatacttcgaaggcctcaatatcccagcaatcgaaaactcaaatgagtg |
27733632 |
T |
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| Q |
320 |
aagcc |
324 |
Q |
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| T |
27733631 |
aagcc |
27733627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 986 - 1043
Target Start/End: Complemental strand, 27732259 - 27732202
Alignment:
| Q |
986 |
gcatggcaatctgacatactcattcactctgatgccaattggattgaatttcgacatt |
1043 |
Q |
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| T |
27732259 |
gcatgacaatttgaaatacacattcactttgatgccaattggattgaattttgacatt |
27732202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 132
Target Start/End: Complemental strand, 27701509 - 27701480
Alignment:
| Q |
103 |
gccaccgtcctccgacgaaccaaaatcttc |
132 |
Q |
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| T |
27701509 |
gccaccgtcctccgacgaaccaaaatcttc |
27701480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 795 - 836
Target Start/End: Complemental strand, 27732800 - 27732759
Alignment:
| Q |
795 |
acctttcgaggctcaaattactgtctgatttgttggtttgtc |
836 |
Q |
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| T |
27732800 |
acctttgggggctcaaattactgtctgatttgttgctttgtc |
27732759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 287 - 360
Target Start/End: Complemental strand, 27733586 - 27733513
Alignment:
| Q |
287 |
caatatctcagcaataaaaaactcaaatgagtgaagccattggcacagctaacagtaatgtaaaaactgaggag |
360 |
Q |
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| T |
27733586 |
caatatcacagcaatcgaaagctcaaactagtgaagcctttgacgcagccaacagtaatgtaaaaactgcggag |
27733513 |
T |
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