View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16651_low_12 (Length: 250)
Name: NF16651_low_12
Description: NF16651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16651_low_12 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 83 - 250
Target Start/End: Original strand, 49039740 - 49039907
Alignment:
| Q |
83 |
tccaattgtattttccgaatgggaggagctgccgtacttctctccaataaatcctttgataggacccaatccaagtacaagttacttcatagcgttcgaa |
182 |
Q |
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| T |
49039740 |
tccaattgtattttccgaatgggaggagctgccgtacttctctccaataaatcctttgataggacccaatccaagtacaagttacttcatagcgttcgaa |
49039839 |
T |
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| Q |
183 |
ctcatttaggagccaatgacaagagctacaattgtgtgttccaaaaagaggacgaaacagggtacaca |
250 |
Q |
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| T |
49039840 |
ctcattcaggagccaatgacaagagctacaattgtgtgttccaaaaagaggacgaaacagggtacaca |
49039907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 244
Target Start/End: Complemental strand, 49041694 - 49041531
Alignment:
| Q |
81 |
tttccaattgtattttccgaatgggaggagctgccgtacttctctccaataaatcctttgataggacccaatccaagtacaagttacttcatagcgttcg |
180 |
Q |
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| T |
49041694 |
tttctaattgcattttccgaatgggtggcgccgccatacttctttccaataagtcctctgatcgaacccgttccaaatacaagcttgttcatacagttcg |
49041595 |
T |
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| Q |
181 |
aactcatttaggagccaatgacaagagctacaattgtgtgttccaaaaagaggacgaaacaggg |
244 |
Q |
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| T |
49041594 |
aacccataaaggagctgatgacaagaactataactgtgtttaccagaaagaagatgagacaggg |
49041531 |
T |
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