View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16651_low_2 (Length: 535)
Name: NF16651_low_2
Description: NF16651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16651_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 49 - 520
Target Start/End: Complemental strand, 26074408 - 26073928
Alignment:
| Q |
49 |
tgaaatccttagacagaaactaccttcctacaaatgccacacttgttaatcaccaatacagtattggggtatgtaatttcatcaactaacaaatcagtta |
148 |
Q |
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| T |
26074408 |
tgaaatccttagacagaaactaccttcctacaaatgccacacttgttaatcaccaatacagtattggggtatgtattttcatcaactaacaaatcagtta |
26074309 |
T |
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| Q |
149 |
aaaaatgaaaattaacttgaattgaaaagacttttccctccaaagaaaaattatggctacctgattaaccatgtaacaccgacacttcatataaaaacgt |
248 |
Q |
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|||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26074308 |
aaaaataaaaattaacttgaattaaaaagacttttccttccaaagaaaaattatggctacctgattaaccatgtaacaccgacacttcatatgaaaacgt |
26074209 |
T |
|
| Q |
249 |
gtttgatgtctgatacgataattgttgtctgatgtctattactatta---------tcgttgttgttattattattagcaaggtctaagtgtaaaggttt |
339 |
Q |
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||||||||| ||||||||||||||||||||||||| ||||||||||| | |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26074208 |
gtttgatgtttgatacgataattgttgtctgatgtatattactattattattattgttgttgttattattattattagcaaggtctaagtgtaaaggttt |
26074109 |
T |
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| Q |
340 |
tgtcaaaggaaaattctgatattaactaactaatatggttgagtttggtatttataggtgcattttgaaggaaaagtgggagatattactataaatggaa |
439 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26074108 |
tgtcaaaggaaaattctgatattaactaactaatatggttgagtttggtatttataggtgcattttgaaggaaaagtgggagatattaatataaatggaa |
26074009 |
T |
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| Q |
440 |
tgaattattcattgaaacaacttcattggcatgcacctgcagagcacatggctcatggtcgtttgtaagttccctctctct |
520 |
Q |
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| T |
26074008 |
tgaattattcattgaaacaacttcattggcatgcacctgcagagcacagggctcatggtcgtttgtaagttccctctctct |
26073928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 26094080 - 26093831
Alignment:
| Q |
18 |
gcaatgacaaatattgttgtgaacaatgtattgaaatccttagacagaaactaccttcctacaaatgccacacttgttaatcaccaatacagtattgggg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26094080 |
gcaatgacaaatattgttgtgaacaatgtattgaaatccttagacagaaactaccttcctacaaatgccacacttgttaaccaccaatacagtattgggg |
26093981 |
T |
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| Q |
118 |
tatgtaatttcatcaactaacaaatcagttaaaaaatgaaaattaacttgaattgaaaagacttttccctccaaagaaaaattatggctacctgattaac |
217 |
Q |
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| T |
26093980 |
tatgtattttcatcaactaacaaatcagtta-aaaataaaaattaacttgaattgaaaagacttttccttctaaagaaaaattgtgcttatctgattaac |
26093882 |
T |
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| Q |
218 |
catgtaacaccgacacttcatataaaaacgtgtttgatgtctgatacgata |
268 |
Q |
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| T |
26093881 |
tatgtaacaccgacactttatataaaaacatgtttgatgtctaatgcgata |
26093831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 335 - 520
Target Start/End: Complemental strand, 26093786 - 26093601
Alignment:
| Q |
335 |
ggttttgtcaaaggaaaattctgatattaactaactaatatggttgagtttggtatttataggtgcattttgaaggaaaagtgggagatattactataaa |
434 |
Q |
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| T |
26093786 |
ggttttgtcaaaggaaaattctgatatcaactaactaatattgttgagtttggtatctataggtgcattttgaaggaaaagtgggcgatattaatataaa |
26093687 |
T |
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| Q |
435 |
tggaatgaattattcattgaaacaacttcattggcatgcacctgcagagcacatggctcatggtcgtttgtaagttccctctctct |
520 |
Q |
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| T |
26093686 |
tggaatgaattattcattgaaacaacttcattggcatgcacctgcagagcacagggctcatggtcgtttgtaagttccctctctct |
26093601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 367 - 514
Target Start/End: Complemental strand, 26105163 - 26105015
Alignment:
| Q |
367 |
aactaatatggttgagtttggtatt-tataggtgcattttgaaggaaaagtgggagatattactataaatggaatgaattattcattgaaacaacttcat |
465 |
Q |
| |
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|||| ||||||||||||||| || ||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
26105163 |
aactgatatggttgagtttgttaaaatataggtacattttgaaggtaaagtgggagatattaacataaatggaatgaattattcattgagacaacttcac |
26105064 |
T |
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| Q |
466 |
tggcatgcacctgcagagcacatggctcatggtcgtttgtaagttccct |
514 |
Q |
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| T |
26105063 |
tggcatgcacctgcagagcacagggctcatggtcgtttgtaagtcccct |
26105015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 20 - 152
Target Start/End: Complemental strand, 26105510 - 26105377
Alignment:
| Q |
20 |
aatgacaaatattgttgtgaacaatgtattgaaatccttagacagaaactaccttcctacaaatgccacacttgttaatcaccaatacagtattggggta |
119 |
Q |
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||||||| ||||||| ||||| | | |||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| || ||||||||| |
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| T |
26105510 |
aatgacagatattgtcatgaaccaggaattgaaatccttagacagaaactaccttcccacaaatgctacacttgttaacaaccaattcaacattggggta |
26105411 |
T |
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| Q |
120 |
tgtaatttcatcaacta-acaaatcagttaaaaa |
152 |
Q |
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|||| ||||||||||| ||||||| ||||||| |
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| T |
26105410 |
tgtatgttcatcaactatacaaatctcttaaaaa |
26105377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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