View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16651_low_3 (Length: 504)
Name: NF16651_low_3
Description: NF16651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16651_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 3e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 27815392 - 27815608
Alignment:
| Q |
14 |
gaagcaccaaagaagaattttgtgtccaaaaaattcaaaatacatccaaattgtttcgagaacttac-----------ttatattttgccaccaccaatg |
102 |
Q |
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| T |
27815392 |
gaagcaccaaagaagaattttggatccaaaaaattcaaaatacatccaaattgtttcgagaacttaccaaagaagtacttatattttaccaccaccaatg |
27815491 |
T |
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| Q |
103 |
atgatttctcatggacagctgaattcaaaccttgtttagataagagctgaatttattgtgcatggactgacttctcttaataaagaaaagcatgtcaagt |
202 |
Q |
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| T |
27815492 |
atgatttctcatggacagctgaattcaaaccctgtttagataagagctgaatttattatgcatggactgacttttcgtaaaaaagaaaagcatgtcaagt |
27815591 |
T |
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| Q |
203 |
tgtgcttttcttcttaa |
219 |
Q |
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| T |
27815592 |
tgtgcttttcttcttaa |
27815608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 317 - 489
Target Start/End: Original strand, 27815706 - 27815877
Alignment:
| Q |
317 |
accaatcttcctagaaaacgttacacccaaaccatgaagaacaaagnnnnnnnnnnn-gccacactcatactacaactacnnnnnnnntatcaacaaaaa |
415 |
Q |
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| T |
27815706 |
accaatcttcctagaaaacgttacacccaaaccatgaagaacaaagaaaaaaaaaaaagccacactcatactacaactacaaaaaaaatatcaacaaaaa |
27815805 |
T |
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| Q |
416 |
gtgatgataataatatatcagaaatttgttcttgccgttggagcccaaatcacatcagaaggaagctgagagct |
489 |
Q |
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| T |
27815806 |
gtgatgat--taatatatcagaaatttgttcttgccgttggagcccaaatcacatcagaaggaagctgagagct |
27815877 |
T |
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