View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16651_low_6 (Length: 342)

Name: NF16651_low_6
Description: NF16651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16651_low_6
NF16651_low_6
[»] chr1 (2 HSPs)
chr1 (18-324)||(52082615-52082921)
chr1 (19-318)||(52092812-52093117)
[»] chr5 (3 HSPs)
chr5 (18-104)||(41889533-41889619)
chr5 (18-81)||(32267509-32267572)
chr5 (18-76)||(41901542-41901600)
[»] chr8 (6 HSPs)
chr8 (18-81)||(18315275-18315338)
chr8 (18-81)||(27922542-27922605)
chr8 (39-81)||(17636403-17636445)
chr8 (39-105)||(28246273-28246339)
chr8 (39-79)||(17628018-17628058)
chr8 (39-79)||(21235613-21235653)
[»] chr4 (7 HSPs)
chr4 (18-81)||(7307894-7307957)
chr4 (18-94)||(532223-532299)
chr4 (21-81)||(8187093-8187153)
chr4 (27-62)||(1754554-1754589)
chr4 (125-171)||(1754624-1754670)
chr4 (18-79)||(1548428-1548489)
chr4 (264-320)||(547193-547249)
[»] chr2 (2 HSPs)
chr2 (258-320)||(32785538-32785600)
chr2 (18-81)||(32785774-32785837)
[»] chr3 (9 HSPs)
chr3 (258-299)||(33708804-33708845)
chr3 (20-77)||(33714861-33714918)
chr3 (264-299)||(33396785-33396820)
chr3 (264-299)||(37580607-37580642)
chr3 (18-81)||(51120895-51120958)
chr3 (258-324)||(514487-514553)
chr3 (264-298)||(33093715-33093749)
chr3 (18-104)||(51113760-51113846)
chr3 (264-296)||(36810812-36810844)
[»] chr7 (3 HSPs)
chr7 (264-316)||(10167444-10167496)
chr7 (264-316)||(10169900-10169952)
chr7 (264-316)||(10177425-10177477)
[»] chr6 (4 HSPs)
chr6 (32-82)||(6423265-6423315)
chr6 (39-104)||(11936254-11936319)
chr6 (39-104)||(11948234-11948299)
chr6 (39-79)||(12102321-12102361)


Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 52082615 - 52082921
Alignment:
Q  18 ttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagattcagtgttgaacaagatctcatttcc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  52082615 ttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagattcagtgttgaacaagatctcatgtcc 52082714  T
Q  118 aagtgaataattttacaatatcttaaaacttcaacgataccgtcagatatgcaatagcaatggcaatatctcaggtcaagcacttgcaagtttggaaaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52082715 aagtgaataattttacaatatcttaaaacttcaacgataccgtcagatatgcaatagcaatggcaatatctcaggtcaagcacttgcaagtttggaaaaa 52082814  T
Q  218 gagaagccaacattttgacgctttcattcttcaacaatggattgcgagccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaatt 317  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52082815 gagaagccaacattttgatgctttcattcttcaacaatggattgcgagccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaatt 52082914  T
Q  318 agagttc 324  Q
    |||||||    
T  52082915 agagttc 52082921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 19 - 318
Target Start/End: Original strand, 52092812 - 52093117
Alignment:
Q  19 tcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagattcagtgttgaacaagatctcatttcca 118  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||  | ||    
T  52092812 tcatcatcaatttttgtctttgccaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagattcaatgttgaccaagatctcaagttca 52092911  T
Q  119 agtgaataattttacaatatcttaaaacttcaacgataccgtcagatatgcaatagcaatggcaata------tctcaggtcaagcacttgcaagtttgg 212  Q
    | ||| ||||||||||| |||||||||||||||| ||||| || |||||||||||||||||||||||      ||||||||||||| | |||| ||||||    
T  52092912 aatgagtaattttacaacatcttaaaacttcaacaataccttcggatatgcaatagcaatggcaatatctcattctcaggtcaagcccctgcaggtttgg 52093011  T
Q  213 aaaaagagaagccaacattttgacgctttcattcttcaacaatggattgcgagccaaatggagagacttcacttgagggtatacaacaaagtccagcaaa 312  Q
     |||||||||| ||||||||||| ||||||||| ||||||  ||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  52093012 gaaaagagaaggcaacattttgatgctttcatttttcaaccgtggattgcctgccaaatggagagacttcacttgagggtatacaacaaagtccatcaaa 52093111  T
Q  313 gaatta 318  Q
     |||||    
T  52093112 caatta 52093117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 41889619 - 41889533
Alignment:
Q  18 ttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagattcagtgttgaaca 104  Q
    ||||||||||| |||||| | ||| |||||||||||||||||||||| ||||| ||||||||||  |||||| |||| | |||||||    
T  41889619 ttcatcatcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcatttcaagtagcttcactattgaaca 41889533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 32267509 - 32267572
Alignment:
Q  18 ttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 81  Q
    ||||||||||| | |||| | |||||||||||| ||||||||||||| ||||| ||||||||||    
T  32267509 ttcatcatcaactattgtttgtgacaagttcaatacctccaatttgggaacttcaaagttcatt 32267572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 41901600 - 41901542
Alignment:
Q  18 ttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagt 76  Q
    ||||||||||| |||||| | |||||||||||||||||||| ||||| ||||| |||||    
T  41901600 ttcatcatcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaagt 41901542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 18315338 - 18315275
Alignment:
Q  18 ttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 81  Q
    ||||||||||| |||||| | |||||||||||||||||||| ||||| ||||| ||||||||||    
T  18315338 ttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaaagttcatt 18315275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 27922542 - 27922605
Alignment:
Q  18 ttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 81  Q
    |||||||||||  ||||| | |||||||||||||||||||||||||| ||||| ||||||||||    
T  27922542 ttcatcatcaacatttgtatatgacaagttcaacacctccaatttgggaacttcaaagttcatt 27922605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 17636445 - 17636403
Alignment:
Q  39 tgacaagttcaacacctccaatttggaaacttgaaagttcatt 81  Q
    |||||||||||||||||||||||||| ||||| ||||||||||    
T  17636445 tgacaagttcaacacctccaatttgggaacttcaaagttcatt 17636403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 28246339 - 28246273
Alignment:
Q  39 tgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagattcagtgttgaacaa 105  Q
    |||||||| ||||||||||| ||||| ||||| |||||||| || | |||| |||||| ||||||||    
T  28246339 tgacaagtccaacacctccagtttgggaacttcaaagttcaatgtatgtagcttcagtcttgaacaa 28246273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 17628058 - 17628018
Alignment:
Q  39 tgacaagttcaacacctccaatttggaaacttgaaagttca 79  Q
    |||||||||||||||||||||||| |||| || ||||||||    
T  17628058 tgacaagttcaacacctccaatttagaaagtttaaagttca 17628018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 21235613 - 21235653
Alignment:
Q  39 tgacaagttcaacacctccaatttggaaacttgaaagttca 79  Q
    |||||||||||||||||||| ||||| ||||| ||||||||    
T  21235613 tgacaagttcaacacctccagtttgggaacttcaaagttca 21235653  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 7307894 - 7307957
Alignment:
Q  18 ttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 81  Q
    ||||||||||| || ||| | |||||||||||| ||||||||||||| ||||| ||||||||||    
T  7307894 ttcatcatcaacttctgtatatgacaagttcaatacctccaatttgggaactttaaagttcatt 7307957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 532223 - 532299
Alignment:
Q  18 ttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagattca 94  Q
    |||||||||||| ||||| | |||||||||||||||||| |  ||||  |||| ||||||||||  |||||||||||    
T  532223 ttcatcatcaatgtttgtatatgacaagttcaacacctctagcttggggacttcaaagttcattccaagtagattca 532299  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 8187153 - 8187093
Alignment:
Q  21 atcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 81  Q
    |||||||| | |||| | |||||||||||||||||||| |||||||| || ||||||||||    
T  8187153 atcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttcaaagttcatt 8187093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 62
Target Start/End: Original strand, 1754554 - 1754589
Alignment:
Q  27 aatttttgtctttgacaagttcaacacctccaattt 62  Q
    |||||||||||| |||||||||||||||||||||||    
T  1754554 aatttttgtcttcgacaagttcaacacctccaattt 1754589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 171
Target Start/End: Original strand, 1754624 - 1754670
Alignment:
Q  125 taattttacaatatcttaaaacttcaacgataccgtcagatatgcaa 171  Q
    |||||||| || |||||||||||||||||||||| | ||||||||||    
T  1754624 taattttagaacatcttaaaacttcaacgatacctttagatatgcaa 1754670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 1548489 - 1548428
Alignment:
Q  18 ttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttca 79  Q
    ||||||||||||  |||| | |||||||||||||||||||| ||||| || || ||||||||    
T  1548489 ttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 1548428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 320
Target Start/End: Original strand, 547193 - 547249
Alignment:
Q  264 agccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaattaga 320  Q
    |||||||||||||||||||| |||||||  ||||||||| |||   |||||||||||    
T  547193 agccaaatggagagacttcaattgagggcttacaacaaaatccttgaaagaattaga 547249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 320
Target Start/End: Complemental strand, 32785600 - 32785538
Alignment:
Q  258 attgcgagccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaattaga 320  Q
    ||||||||||||||||||| |||| | |||||||  ||||||||| |||| ||||||||||||    
T  32785600 attgcgagccaaatggagaaactttaattgagggattacaacaaaatccatcaaagaattaga 32785538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 32785837 - 32785774
Alignment:
Q  18 ttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 81  Q
    ||||||||||||| |||| | |||||||||||||||||| | ||||| | ||| ||||||||||    
T  32785837 ttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagctttaaagttcatt 32785774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 299
Target Start/End: Complemental strand, 33708845 - 33708804
Alignment:
Q  258 attgcgagccaaatggagagacttcacttgagggtatacaac 299  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  33708845 attgtgagccaaatggagagacttcacttgatggtatacaac 33708804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 33714918 - 33714861
Alignment:
Q  20 catcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagtt 77  Q
    ||||||||||| |||  ||||||||||||| |||||||| ||||||||||| ||||||    
T  33714918 catcatcaattcttgagtttgacaagttcagcacctccagtttggaaacttcaaagtt 33714861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 299
Target Start/End: Original strand, 33396785 - 33396820
Alignment:
Q  264 agccaaatggagagacttcacttgagggtatacaac 299  Q
    ||||||||||||||||||||||||| ||||||||||    
T  33396785 agccaaatggagagacttcacttgatggtatacaac 33396820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 299
Target Start/End: Complemental strand, 37580642 - 37580607
Alignment:
Q  264 agccaaatggagagacttcacttgagggtatacaac 299  Q
    ||||||||||||||||||||||||| ||||||||||    
T  37580642 agccaaatggagagacttcacttgatggtatacaac 37580607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 51120958 - 51120895
Alignment:
Q  18 ttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 81  Q
    ||||||||||| | |||| |  ||||||||||||||||||||||||  ||||| ||||||||||    
T  51120958 ttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcatt 51120895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 514553 - 514487
Alignment:
Q  258 attgcgagccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaattagagttc 324  Q
    |||| ||||||||| |||||| || | ||||||||  ||||||||||||| ||||||||| ||||||    
T  514553 attgtgagccaaatagagagattttaattgagggttcacaacaaagtccaacaaagaattggagttc 514487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 298
Target Start/End: Complemental strand, 33093749 - 33093715
Alignment:
Q  264 agccaaatggagagacttcacttgagggtatacaa 298  Q
    ||||||||||||||||||||||||| |||||||||    
T  33093749 agccaaatggagagacttcacttgacggtatacaa 33093715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 51113846 - 51113760
Alignment:
Q  18 ttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagattcagtgttgaaca 104  Q
    |||||||||||   |||| ||||||||||  |||||||||| ||||| | ||| ||||||||||  |||||| |||||| |||||||    
T  51113846 ttcatcatcaaccattgtatttgacaagtctaacacctccagtttgggagcttcaaagttcattccaagtagcttcagttttgaaca 51113760  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 296
Target Start/End: Complemental strand, 36810844 - 36810812
Alignment:
Q  264 agccaaatggagagacttcacttgagggtatac 296  Q
    ||||||||||||||||||||||||| |||||||    
T  36810844 agccaaatggagagacttcacttgatggtatac 36810812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 10167496 - 10167444
Alignment:
Q  264 agccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaat 316  Q
    |||||||| ||||||||||| ||||||||||||| |||| ||| |||||||||    
T  10167496 agccaaatagagagacttcaattgagggtatacaccaaaatccggcaaagaat 10167444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 10169952 - 10169900
Alignment:
Q  264 agccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaat 316  Q
    |||||||| ||||||||||| ||||||||||||| |||| ||| |||||||||    
T  10169952 agccaaatagagagacttcaattgagggtatacaccaaaatccggcaaagaat 10169900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 10177477 - 10177425
Alignment:
Q  264 agccaaatggagagacttcacttgagggtatacaacaaagtccagcaaagaat 316  Q
    |||||||| ||||||||||| ||||||||||||| |||| ||| |||||||||    
T  10177477 agccaaatagagagacttcaattgagggtatacaccaaaatccggcaaagaat 10177425  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 6423265 - 6423315
Alignment:
Q  32 ttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattg 82  Q
    |||| ||||||||||||||||||||||  |||| ||||| |||||||||||    
T  6423265 ttgtatttgacaagttcaacacctccagcttgggaacttaaaagttcattg 6423315  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 11936319 - 11936254
Alignment:
Q  39 tgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagattcagtgttgaaca 104  Q
    |||||||| ||||||||||| ||||| ||||| |||||||| || | |||| |||||| |||||||    
T  11936319 tgacaagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagcttcagtcttgaaca 11936254  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 11948299 - 11948234
Alignment:
Q  39 tgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagattcagtgttgaaca 104  Q
    |||||||| ||||||||||| ||||| ||||| |||||||| || | |||| |||||| |||||||    
T  11948299 tgacaagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagcttcagtcttgaaca 11948234  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 12102321 - 12102361
Alignment:
Q  39 tgacaagttcaacacctccaatttggaaacttgaaagttca 79  Q
    |||||||||||||||||||| ||||| ||||| ||||||||    
T  12102321 tgacaagttcaacacctccagtttgggaacttcaaagttca 12102361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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