View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16652_high_10 (Length: 441)
Name: NF16652_high_10
Description: NF16652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16652_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 14 - 429
Target Start/End: Original strand, 216939 - 217349
Alignment:
| Q |
14 |
ctttgttgatacaagttcaatacatatgaattggtatttcatttgttgattaattgaattgaactctactattgcaagtagtaaatttgtgaccaataaa |
113 |
Q |
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| T |
216939 |
ctttgttgatacaagttcaatacatatgaattggtatttcatttgttgattaattgaattgaactctactattgcaagtagtaaatttgtgaccaataaa |
217038 |
T |
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| Q |
114 |
ggaataaaaattcaatggtacaaaagcaattgtaacgtgacatgtattgnnnnnnnctctaccgaaaaaagtaattgagctggtgaatgtataaaagaca |
213 |
Q |
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| T |
217039 |
ggaataaaaattcaatggtacaaaagcaattgtaacgtgacatgtattgtttttttctctaccgaaaaaagtaattgagctggtgaatgtataaaagaca |
217138 |
T |
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| Q |
214 |
tttattatttttaagcaaagaggacatagttagaaacaacttaatcttagaagttgtaccatggactaaccaaagcttataaaaccatgacaataagcaa |
313 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
217139 |
tttattatttttaagcaaagaggacacagttagaaacaacttaatcttagaagttgtaccatggactaaccaaagcttataaaaccatgacaataag--- |
217235 |
T |
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| Q |
314 |
tacaatacaatgacatagtgttatccaccataaatattgccatattacccaatttgacatgcacacaatgacatacacgtggaatggtgtcaagtacaaa |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
217236 |
--caatacaatgacatagtgttatccaccataaatattgctatattacccaatttgacatgcacacaatgacatacacgtggaatggtgtcaagtacaaa |
217333 |
T |
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| Q |
414 |
gatgaaaccttcccta |
429 |
Q |
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|||||||||| ||||| |
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| T |
217334 |
gatgaaacctccccta |
217349 |
T |
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