View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16652_high_12 (Length: 431)
Name: NF16652_high_12
Description: NF16652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16652_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 14 - 418
Target Start/End: Complemental strand, 3986212 - 3985808
Alignment:
| Q |
14 |
aggtagcaatagtaaactgaaaggttagcaaacaaagaacataaagttaaacttgagagaatttgattgaaactgactaggcaatcaagacgagcgttga |
113 |
Q |
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| T |
3986212 |
aggtagcaatagtaaactgaaaggttagcaaacaaagaacataaagttaaacttgagagaatttgattgaaactgactaggcaatcaagacgagcgttga |
3986113 |
T |
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| Q |
114 |
ttgttttgatgtcttttagaggctgcaacaaattggcacgaaggagcctagtcctggaggaaaaaagaagtgtcaatcaactaatgctgcgcctggaaac |
213 |
Q |
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| T |
3986112 |
ttgttttgatgtcttttagaggctgcaacaaattggcacgaaggagcctagtcctggaggaaaaaataagtgtcaatcaactaatgctgcgcctggaaac |
3986013 |
T |
|
| Q |
214 |
ttgtgtgaatcattgcataccctccaatagttttagttgtcttgagcatgtgaaatagacttctctttttgttgcttgttcccaatagggcagaatgaaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3986012 |
ttgtgtgaatcattgcataccctccaatagttttagttgtcttgagcatgtgaaatagacttctctttttgttgcttgttcccagtagggcagaatgaaa |
3985913 |
T |
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| Q |
314 |
tggctcaataatttccaagttttggacactgcgtttaaatttgaagcaagaaatatattatcatagactaaacagatgatatatgaaatgttaaatggac |
413 |
Q |
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| T |
3985912 |
tggctcaataatttccaagttttggacactgcgtttaaatttgaagcaagaaatatattatcatagactaaacagatgatatatgaaatgttaaatggac |
3985813 |
T |
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| Q |
414 |
tttat |
418 |
Q |
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| T |
3985812 |
tttat |
3985808 |
T |
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