View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16652_high_15 (Length: 346)
Name: NF16652_high_15
Description: NF16652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16652_high_15 |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 15246056 - 15246294
Alignment:
| Q |
18 |
gtaatgtccatttgtaaacgtcgtcgtaatttatttatttttgtaaaactattttatcaaatttagatgaagacaaacaaatgtgaccgttcatgcttta |
117 |
Q |
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| T |
15246056 |
gtaatgtccatttataaacgtcgtcgtaatttatttatttttgtaaaactcttttatcgaatttagatgaagacaaacaaatgtgaccattcatgcttta |
15246155 |
T |
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| Q |
118 |
acatggataaccacatccatagttaaagaaataatataaacatgt--cccctnnnnnnnnntacataaatggaacnnnnnnnnagcaaacataaatggaa |
215 |
Q |
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| T |
15246156 |
acaaggataaccacatccataactaaagaaataatataaacacgttccccctaaaaaaatatacataaatggaacttttttctagcaaacataaatggaa |
15246255 |
T |
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| Q |
216 |
catttaccattgaccattgtaaagaaaagtatgttctat |
254 |
Q |
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| T |
15246256 |
catgtaccattgaccattgtaaagaaaagtatgttctat |
15246294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 287 - 335
Target Start/End: Original strand, 15246326 - 15246374
Alignment:
| Q |
287 |
ggttaggtaaaagaggtgcaacacaaagatttttcaggaggtcacctat |
335 |
Q |
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| T |
15246326 |
ggttaggtaaaagaggtgcaacacaaggacttttcaggaggtcacctat |
15246374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 65287 - 65250
Alignment:
| Q |
295 |
aaaagaggtgcaacacaaagatttttcaggaggtcacc |
332 |
Q |
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| T |
65287 |
aaaagaggtgcaacacaaagacttttcaggaggtcacc |
65250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 14903220 - 14903183
Alignment:
| Q |
295 |
aaaagaggtgcaacacaaagatttttcaggaggtcacc |
332 |
Q |
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| T |
14903220 |
aaaagaggtgcaacacaaggacttttcaggaggtcacc |
14903183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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