View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16652_high_19 (Length: 296)
Name: NF16652_high_19
Description: NF16652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16652_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 15 - 275
Target Start/End: Complemental strand, 36323795 - 36323535
Alignment:
| Q |
15 |
caaaggcaaaggtgatcatagcaaagacaatagcaatggtggagattcccaaacccaaatcccatcctttgttgtcttgtatccatacattaaaagttaa |
114 |
Q |
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| T |
36323795 |
caaaggcaaaggtgatcatagcaaagacaatagcaatggtggagattcccaaacccaaatcccatcctttgttgtcttgtatccatacattaaaagttaa |
36323696 |
T |
|
| Q |
115 |
gctgacagaaccaccaacgcaaattgcaagcaagagaccattaaagaagctggacatttgtcttgcttctttgggatctttttcatcaaactggtcagca |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36323695 |
gctgacagaaccaccaacgcaaattgcaagcaagagaccattaaagaagctggacatttgtcttgtttctttgggatctttttcatcaaactggtcagca |
36323596 |
T |
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| Q |
215 |
ccatgtgctggcagagaagctttcaagcctgcactaccaaaggccaacaagtagagaccaa |
275 |
Q |
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| T |
36323595 |
ccatgtgctggcagagaagctttcaagcctgcactaccaaaggccaacaagtagagaccaa |
36323535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 36330637 - 36330384
Alignment:
| Q |
19 |
ggcaaaggtgatcatagcaaagacaatagcaatggtggagattcccaaacccaaatcccatcctttgttgtcttgtatccatacattaaaagttaagctg |
118 |
Q |
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||||||| ||||||||||||||||||||||||||||||| ||||| || ||| |||||||||||||| ||| |||||||||||||||||| ||||||||| |
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| T |
36330637 |
ggcaaagatgatcatagcaaagacaatagcaatggtggatattccaaatccccaatcccatcctttgctgttttgtatccatacattaaatgttaagctg |
36330538 |
T |
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| Q |
119 |
acagaaccaccaacgcaaattgcaagcaagagaccattaaagaagctggacatttgtcttgcttctttgggatctttttcatcaaactggtcagcaccat |
218 |
Q |
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| T |
36330537 |
acagaaccaccaatgcaaacagcaagcaagagagcattaaagaagctagacatttgtcttgtttctttgggatctttttcatcaaactggtcagcaccat |
36330438 |
T |
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| Q |
219 |
gtgctggcagagaagctttcaagcctgcactaccaaaggccaacaagtagagac |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36330437 |
gtgctggcagagaagctttcaagcctgcactaccaaaggccaacaagtatagac |
36330384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 72 - 272
Target Start/End: Complemental strand, 37920086 - 37919886
Alignment:
| Q |
72 |
aatcccatcctttgttgtcttgtatccatacattaaaagttaagctgacagaaccaccaacgcaaattgcaagcaagagaccattaaagaagctggacat |
171 |
Q |
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||||||| |||||| ||| ||||||| |||||||||| |||||| ||||||||||| ||| ||||| |||| |||||| ||||||| ||||| ||||| |
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| T |
37920086 |
aatcccaccctttgctgttttgtatctatacattaaatgttaagttgacagaaccatcaatgcaaacaacaagtaagagaacattaaataagctagacat |
37919987 |
T |
|
| Q |
172 |
ttgtcttgcttctttgggatctttttcatcaaactggtcagcaccatgtgctggcagagaagctttcaagcctgcactaccaaaggccaacaagtagaga |
271 |
Q |
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|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
37919986 |
ttgtcttgtttctttgagatctttttcatcaaactggtcagcaccatgtgctggcagagaagctttcaagcctgcactaccaaaggccaacacgtataga |
37919887 |
T |
|
| Q |
272 |
c |
272 |
Q |
| |
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| |
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|
| T |
37919886 |
c |
37919886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 72 - 275
Target Start/End: Complemental strand, 5459004 - 5458801
Alignment:
| Q |
72 |
aatcccatcctttgttgtcttgtatccatacattaaaagttaagctgacagaaccaccaacgcaaattgcaagcaagagaccattaaagaagctggacat |
171 |
Q |
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||||||||||||||||| ||||||||||||| | |||||||||||||| | |||||| | ||||| |||||||||||| |||||||||| ||||||| |
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| T |
5459004 |
aatcccatcctttgttgatttgtatccatacaatgaaagttaagctgactgcaccacccatgcaaacagcaagcaagagaacattaaagaatgtggacat |
5458905 |
T |
|
| Q |
172 |
ttgtcttgcttctttgggatctttttcatcaaactggtcagcaccatgtgctggcagagaagctttcaagcctgcactaccaaaggccaacaagtagaga |
271 |
Q |
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|| || |||||||||||||| ||||||||| ||||| |||||||||| ||||| | |||||| |||||||| || |||||||||||||| ||| |
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| T |
5458904 |
tttcttttcttctttgggatctgattcatcaaattggtctgcaccatgtgatggcaatgcagctttggttcctgcactgccgaaggccaacaagtataga |
5458805 |
T |
|
| Q |
272 |
ccaa |
275 |
Q |
| |
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|||| |
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| T |
5458804 |
ccaa |
5458801 |
T |
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