View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16652_high_3 (Length: 665)

Name: NF16652_high_3
Description: NF16652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16652_high_3
NF16652_high_3
[»] chr7 (1 HSPs)
chr7 (15-649)||(44693658-44694307)


Alignment Details
Target: chr7 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 15 - 649
Target Start/End: Original strand, 44693658 - 44694307
Alignment:
Q  15 atgaaagggacaatttcccaaaatgataggaatacaaacgagaaacacacgctggttttgtgtttcacgtacacgtcactaatttcagccatgcagttgc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44693658 atgaaagggacaatttcccaaaatgataggaatacaaacgagaaacacacgctggttttgtgtttcacgtacacgtcactaatttcagccatgcagttgc 44693757  T
Q  115 tgcacgtggcacttccttgaaatcacgtgctttcctacgaaaccttgaaaacgaaacgagagatttgcactaacaagcacgtgcaataatcacttaagta 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  44693758 tgcacgtggcacttccttgaaatcacgtgctttcctacgaaaccttgaaaacgaaacgagagatttgcactaacaagcacgtgcaataatcactta---- 44693853  T
Q  215 ttttaaaacatttcttccccagaaaagtaaaatttctttcagaattcgaaattgaaactacttacgctatcagcatcaccaccaccaccctgagattat- 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||     
T  44693854 ttttaaaacatttcttccccagaaaagtaaaatttctttcagaattcgaaattgaaactacttacgctatcagcatcaccaccacc---ctgagattatc 44693950  T
Q  314 ------------------atcaatttaactatctgtttagttcaaagattccataaccatattcatataatctttaaaaacaatggatactttgtgttta 395  Q
                      ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  44693951 acagaacataatcgttatatcaatttaactatctgtttagttcaaagattccataaccatattcatacaatctttaaaaacaatggttactttgtgttta 44694050  T
Q  396 ttacaaagtgggattcctggtatagttcctttaatcacttctattactgcaaccactactacttcacgtgccaatgatcacgttcacgtgcatcaatctc 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44694051 ttacaaagtgggattcctggtatagttcctttaatcacttctattagtgcaactactactacttcacgtgccaatgatcacgttcacgtgcatcaatctc 44694150  T
Q  496 acgtaaccacagtgaggcgatcaaacaagtcctccatgttttccagattcataggtagctccgccagaaacaattgcctt---gcagtcaacgacgcctt 592  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  44694151 acgtaaccacagtgaggcgatcaaacaagtcctccatgttttccagattcataggtagctccgccagaaacaattgccttgcagcagtcaacgacgcctt 44694250  T
Q  593 taccgcggagaatgcagacagagctgtgaaagaaggagatggacaaaatgggaactg 649  Q
     ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  44694251 caccgcggagaatgcagacagaactgtgaaagaaggagatggacaaaatgggaactg 44694307  T

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