View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16652_high_6 (Length: 515)
Name: NF16652_high_6
Description: NF16652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16652_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 13 - 496
Target Start/End: Original strand, 7299429 - 7299912
Alignment:
| Q |
13 |
agcagagacaggataaaagggaacttcagcttcattagcaatagcataagcaagcatagtttttccacaaccagatggcccatgtaacaaaattcctctt |
112 |
Q |
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| T |
7299429 |
agcagagacaggataaaagggaacttcagcttcattagcaatagcataagcaagcatagtttttccacaaccagatggcccatgtaacaaaattcctctt |
7299528 |
T |
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| Q |
113 |
ttaggtttcattccatactctttaatcaattcaggttgacgcagtaacttaacacttctcttcaattcctttattatcttcttcatttcatttccaacta |
212 |
Q |
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| T |
7299529 |
ttaggtttcattccatactctttaatcaattcaggttgacgcagtaacttaacacttctcttcaattcctttattatcttcttcatttcatttccaacta |
7299628 |
T |
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| Q |
213 |
aatccttaaacatagtcacctctt------catcagcataagattcagtttcttcttcggattcaggttcaggtacaggttcaataatcttgcgtttctt |
306 |
Q |
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| T |
7299629 |
aatccttaaacatagtcacctcttcatcagcatcagcatcagattcagtttcttcttcggattcaggtt------caggttcaataatcttgcgtttctt |
7299722 |
T |
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| Q |
307 |
tgaaagagtttcttcattgttgttgttagaagaagaagcgagagctttacgaactaaatgaaggagtggtggatttgttttccagctgtaatcggagtaa |
406 |
Q |
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| T |
7299723 |
tgaaagagtttcttcattgttgttgttagaagaagaagcgagagctttacgaactaaatgaaggagtggtggatttgttttccagctgtaatcggagtaa |
7299822 |
T |
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| Q |
407 |
gttttatggagataatcggtgatttcttcggcggatgagaattttgatttgcaagaattgattctactgagaagcacttgttggtaacgt |
496 |
Q |
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| T |
7299823 |
gttttatagagataatcggtgatttcttcggcggatgagaattttgatttgcaagaattgattctactgagaagcacttgttggtaacgt |
7299912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 7309191 - 7309286
Alignment:
| Q |
13 |
agcagagacaggataaaagggaacttcagcttcattagcaatagcataagcaagcatagtttttccacaaccagatggcccatgtaacaaaattcc |
108 |
Q |
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| T |
7309191 |
agcagaaataggataaaaaggaagttcagtttcattagcaatagcatgagcaagtctagttttcccacaaccaggtggtccgtgcagcaaaattcc |
7309286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 274 - 469
Target Start/End: Original strand, 36250430 - 36250622
Alignment:
| Q |
274 |
ttcaggtacaggttcaataatcttgcgtttcttt-gaaagagtttcttcattgttgttgttagaagaagaagcgagagctttacgaactaaatgaaggag |
372 |
Q |
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| T |
36250430 |
ttcaggttcagattcatgaatcttgcgtctcttttgaaagaatttcatcattgttgttg---gaagaagaagcaagagcgtct-gaactaaatgaaggag |
36250525 |
T |
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| Q |
373 |
tggtggatttgttttccagctgtaatcggagtaagttttatggagataatcggtgatttcttcggcggatgagaattttgatttgcaagaattgatt |
469 |
Q |
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| T |
36250526 |
tggtggattcgttttgcagctgtactcagagtaagttttacggagatagtcgacaattttttcggcggttgagaattttgatttgaaaggattgatt |
36250622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 117 - 183
Target Start/End: Original strand, 36250251 - 36250317
Alignment:
| Q |
117 |
gtttcattccatactctttaatcaattcaggttgacgcagtaacttaacacttctcttcaattcctt |
183 |
Q |
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| T |
36250251 |
gtttcattccatactctataatcaattcaggttgacatagtaatttcacacttctctttgattcctt |
36250317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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