View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16652_high_9 (Length: 451)
Name: NF16652_high_9
Description: NF16652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16652_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 7425627 - 7426060
Alignment:
| Q |
1 |
ccaaggaataaaatccccaatattgaagaccccattaagcaaaaacaattcatctaacatcttcttaaactcttcaggggaaataatagcattttcactc |
100 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7425627 |
ccaaggaataaaatccccaacattgaggaccccattaagcaaaaacaattcatctaacatcttcttaaactcttcaggggaaataatagcattttcactc |
7425726 |
T |
|
| Q |
101 |
ttctccaaatactttttccccaaaaccatgcgacttataacattgagactcaaagttgaaagatggtccttcaacaaaattgttttgttttttgagttaa |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7425727 |
ttctccaaatactttttgcccaaaaccatgcgacttataacattgagactcaaagttgaaagatggtccttcaacaaaattgttttgttttttgaattaa |
7425826 |
T |
|
| Q |
201 |
atagttcgtgcaagaaagcatgtaactcttgttttctcatgtactcataagactcgaggcgttttacactaaacagttctagtagacacattttacgagc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7425827 |
atagttcgtgcaagaaagcatgtaactcttgttttctcatgtactcataagactcaaggcgttttacactaaacagttctagcagacacattttacgagc |
7425926 |
T |
|
| Q |
301 |
ttgttgccaatatgggccgtattgggaccaagtaatgttggagtagttataagtagtatattttccagcggagaatttgggccgcccagcaaggacagcg |
400 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7425927 |
ttgttgccaatatgggccatattgggaccaagtaatgttggagtagttataagtagtatattttccagcggagaatttgggccgcccagcaaggacagcg |
7426026 |
T |
|
| Q |
401 |
tcgtttgttttgaggaaagctttggctatttctg |
434 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| |
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| T |
7426027 |
tcgtttgttttgaggaaaactttggctatttctg |
7426060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 7431616 - 7432049
Alignment:
| Q |
1 |
ccaaggaataaaatccccaatattgaagaccccattaagcaaaaacaattcatctaacatcttcttaaactcttcaggggaaataatagcattttcactc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||| ||||||||||| |
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|
| T |
7431616 |
ccaaggaataaaatccccaatattgaagaccccattaagcaaaaacaactcatccaacatctccttaaactcttcaggggaaataataacattttcactc |
7431715 |
T |
|
| Q |
101 |
ttctccaaatactttttccccaaaaccatgcgacttataacattgagactcaaagttgaaagatggtccttcaacaaaattgttttgttttttgagttaa |
200 |
Q |
| |
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|||||||| || || |||||||| |||||||| ||||||| ||| ||||| ||||||||||||||||||||||||||||| ||||| |||||||| || | |
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| T |
7431716 |
ttctccaagtatttcttccccaacaccatgcggcttataatattaagactaaaagttgaaagatggtccttcaacaaaatagttttattttttgaattga |
7431815 |
T |
|
| Q |
201 |
atagttcgtgcaagaaagcatgtaactcttgttttctcatgtactcataagactcgaggcgttttacactaaacagttctagtagacacattttacgagc |
300 |
Q |
| |
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| |||| |||| ||| |||||| |||| ||||||||||||||||||||||||||| | |||||||||||||| ||| | || |||||||||| || |
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| T |
7431816 |
agagtttatgcagaaaaatatgtaattcttcttttctcatgtactcataagactcgagactttttacactaaacaattccctttgaaacattttacgggc |
7431915 |
T |
|
| Q |
301 |
ttgttgccaatatgggccgtattgggaccaagtaatgttggagtagttataagtagtatattttccagcggagaatttgggccgcccagcaaggacagcg |
400 |
Q |
| |
|
|||||| ||||||| |||||| || |||||| ||||| |||||||||||||| || |||||||| || |||||||| || || |||||||| | |
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| T |
7431916 |
ttgttgaaaatatggaccgtatgggttccaagtgatgttagagtagttataagttgtgtattttccgcaggcaaatttgggtcgtccgacaaggacaatg |
7432015 |
T |
|
| Q |
401 |
tcgtttgttttgaggaaagctttggctatttctg |
434 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||| |
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|
| T |
7432016 |
tcgtttgttttaaggaaagctttggctatatctg |
7432049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 7416641 - 7417033
Alignment:
| Q |
1 |
ccaaggaataaaatccccaatattgaagaccccattaagcaaaaacaattcatctaacatcttcttaaactcttcaggggaaataatagcattttcactc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||| ||||| ||| || |
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| T |
7416641 |
ccaaggaataaaatccccaatattgagaattccattaagtaaaaacaactcatccaacatcttcttaaactcatcaggggaaataactgcattatcagtc |
7416740 |
T |
|
| Q |
101 |
ttctccaaatactttttccccaaaaccatgcgacttataacattgagactcaaagttgaaagatggtccttcaacaaaattgttttgttttttgagttaa |
200 |
Q |
| |
|
|| ||||| ||||||||||| | ||||| |||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||| || | |
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| T |
7416741 |
ttttccaagtactttttccctagcaccattcgacttataacatttagactcaaagttgaaagatggtctttcaccaaaattgttttgttttttgaattga |
7416840 |
T |
|
| Q |
201 |
atagttcgtgcaagaaagcatgtaactcttgttttctcatgtactcataagactcgaggcgttttacactaaacagttctagtagacacattttacgagc |
300 |
Q |
| |
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| |||| ||||| ||| |||| | |||||||||||| |||||||| |||||||||||||||||| ||||||||| || | |||||||||| ||||||| |
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| T |
7416841 |
aaagtttatgcaaaaaatcatgcatctcttgttttcttatgtactcgtaagactcgaggcgttttgcactaaacaactccaatagacacattctacgagc |
7416940 |
T |
|
| Q |
301 |
ttgttgccaatatgggccgtattgggaccaagtaatgttggagtagttataagtagtatattttccagcggagaatttgggccgcccagcaag |
393 |
Q |
| |
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||| |||||||||| || ||||| |||||||| |||| || |||||||| || || ||||||||||| || ||||||||||| || ||||| |
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| T |
7416941 |
ttgacgccaatatggaccatattgagaccaagttatgtctgaatagttatatgttgtgtattttccagccgacaatttgggccggccggcaag |
7417033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 191
Target Start/End: Complemental strand, 7430039 - 7429973
Alignment:
| Q |
125 |
accatgcgacttataacattgagactcaaagttgaaagatggtccttcaacaaaattgttttgtttt |
191 |
Q |
| |
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||||||||||| |||| ||||| ||| |||||||||||||||||||| ||| |||| ||||| |||| |
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| T |
7430039 |
accatgcgactaataatattgaaactaaaagttgaaagatggtcctttaacgaaatagttttatttt |
7429973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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