View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16652_low_1 (Length: 980)
Name: NF16652_low_1
Description: NF16652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16652_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 777; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 777; E-Value: 0
Query Start/End: Original strand, 110 - 971
Target Start/End: Original strand, 32239768 - 32240630
Alignment:
| Q |
110 |
atctatacatcttacaaagcatttgcttccaattttactgtgcgattcacttccagcgagttccgcccttctccgcatttggcgctgatttctgtcagtt |
209 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32239768 |
atctatacatcttacaaagcatttgcttccaattttactgtgcgattcacttccagcgagttccgcccttctccgcatttggcgctgatttctgtcggtt |
32239867 |
T |
|
| Q |
210 |
ttctgtgcatggaggttttgtagctgtgttctatatctgctatttctattttgttttttacctcttttgcagtggctggttgttttcagccaatttcata |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32239868 |
ttctgtgcatggaggttttgtagctgtgttctatatctgctatttctattttgttttttacctcttttgcagtggctggttgttttcagccaatttcata |
32239967 |
T |
|
| Q |
310 |
gctaggtgctacttctgtgtgctatattatggtgaaagtaatgggttagagatgtaggctttttgtattctaatgtgatctattaatcttacaatagaac |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32239968 |
gctaggtgctacttctgtgtgctatattatggtgaaagtaatgggttagagatgcaggctttttgtattctaatgtgatctattaatcttacaatagaac |
32240067 |
T |
|
| Q |
410 |
ctcttcaaatccaactgttccatacactaccagcgggatccgcccttcttcgcttctgctgctactctctgtgggttttctggtttctgaggatatgtag |
509 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32240068 |
ctcttcaaatccaactgttccatacactaccagcgggatccgcccttcttcgcttctgctgctgctctctgtgggttttctggtttctgaggatatgtag |
32240167 |
T |
|
| Q |
510 |
ctgggtgctacgcctgttcctttttactttcnnnnnnnnnngtgtgtggtttataggcttctacggtgctctctggggtttccactcacagagcacctat |
609 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32240168 |
ctgggtgctacgcctgttcctttttactttc-tttttttttgtgtgtggtttataggcttctgcggtgctctctggggtttccactcacagagcacctat |
32240266 |
T |
|
| Q |
610 |
aaaaggtgttaaacttttgtcagaaggtttgaaaattttgtcttttgttcagagattctgaaatccccctgttttaatttaattttcacttggattggtt |
709 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32240267 |
aaaaggtgttaaacttttgtcagaaggtttgaaaattttgtcttttgttcagagattctgaaacccccctgttttaatttaattttcacttggattggtt |
32240366 |
T |
|
| Q |
710 |
gattaaacaatgcattttatctgtcnnnnnnncactataaattttacttcatttgctggaaatttctggtttagggtatatgtggtttctgcaaaaggta |
809 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32240367 |
gattaaacaatgcattttatctgtctttttttcactataaattttacttcatttgctggaaatttctggtttagggtatatgtggtttctgcaaaaggta |
32240466 |
T |
|
| Q |
810 |
attaccatgtgtcaggaagtttgaaactattggcaatgggtcagagatactgatttttcccttcttttcttttaattgattctgacactgcgtgtataaa |
909 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32240467 |
attaccatgtgtcaggaagtttgaaactattggcaatgggtcagagatactgatttttcccttcttttcttttaattgattctgacactgcgtgtataaa |
32240566 |
T |
|
| Q |
910 |
agatgaaattcata--tgccctttttctctataaaatggtgcttgctgtgttcatttcatctca |
971 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32240567 |
agatgaaattcatatgtgccctttttctctataaaatggtgcttgctgtgttcatttcatctca |
32240630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 4e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 110 - 245
Target Start/End: Original strand, 46470046 - 46470181
Alignment:
| Q |
110 |
atctatacatcttacaaagcatttgcttccaattttactgtgcgattcacttccagcgagttccgcccttctccgcatttggcgctgatttctgtcagtt |
209 |
Q |
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||||||||||||||||||| |||||||||| |||||||||||| |||| ||||| | ||||||||| |||||||||| ||||||||||||| |||||||| |
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| T |
46470046 |
atctatacatcttacaaaggatttgcttccgattttactgtgcaattcccttccggtgagttccgctcttctccgcaattggcgctgatttatgtcagtt |
46470145 |
T |
|
| Q |
210 |
ttctgtgcatggaggttttgtagctgtgttctatat |
245 |
Q |
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|||||||| |||||| |||||||||||||||||||| |
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| T |
46470146 |
ttctgtgcttggaggctttgtagctgtgttctatat |
46470181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 33435757 - 33435811
Alignment:
| Q |
160 |
ttccagcgagttccgcccttctccgcatttggcgctgatttctgtcagttttctg |
214 |
Q |
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||||||||| ||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
33435757 |
ttccagcgaaatccgcccttctccgcgtttggcgctgaactctgtcagttttctg |
33435811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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