View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16652_low_11 (Length: 439)

Name: NF16652_low_11
Description: NF16652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16652_low_11
NF16652_low_11
[»] chr7 (2 HSPs)
chr7 (1-359)||(78718-79075)
chr7 (1-93)||(2440904-2440996)
[»] chr6 (3 HSPs)
chr6 (1-96)||(6301516-6301611)
chr6 (1-96)||(6308326-6308421)
chr6 (260-340)||(164023-164102)
[»] chr8 (1 HSPs)
chr8 (264-341)||(24468119-24468196)
[»] chr4 (1 HSPs)
chr4 (260-340)||(18208307-18208386)


Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 79075 - 78718
Alignment:
Q  1 tagatagcaacagatgatccattacacctcaaaacatccattacatccacaaaaccttgacaggcaaggatctaaataaaaggtgccaaaacataaggca 100  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||    
T  79075 tagatagcaacagacgatctattacacctcaaaacatccattacatccacaaaaccttgacaagcaaggatctaaataaaatgttccaaaacataaggca 78976  T
Q  101 aaaacagattgttcaaaatcagtagaa-gagataagaagnnnnnnnntaagctcaaaaagatcatccctaaaggacacacagctatcataatcaactcaa 199  Q
    |||||||||||||||||||||| |||| ||||||||||         ||||||||||||||||||||||||||||||||| ||||||||||||||| |||    
T  78975 aaaacagattgttcaaaatcaggagaaagagataagaa--aaaaaaataagctcaaaaagatcatccctaaaggacacactgctatcataatcaacgcaa 78878  T
Q  200 taatgaaaagaatacacgaattatgcaagttgaggccacgtcgtataattagctcacatgttcaacatcaaactctatgagatatctcctatatttcact 299  Q
    ||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  78877 taatgaaaagaatacacgaattatgcaaggtgaggtcacgtcctataattagctcacatgttcaacatcaaactctatgagatatgtcctatatttcacc 78778  T
Q  300 cgcaacttgttgacaatcttctccaactcagatacaggattcggtttcaagggcactggc 359  Q
    |||||||| |||||||||||||||||||| |||||| || || |||||||||||||||||    
T  78777 cgcaacttattgacaatcttctccaactctgatacaagaatctgtttcaagggcactggc 78718  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 2440996 - 2440904
Alignment:
Q  1 tagatagcaacagatgatccattacacctcaaaacatccattacatccacaaaaccttgacaggcaaggatctaaataaaaggtgccaaaaca 93  Q
    |||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  2440996 tagatagcaacaaatgatccattacaccacaaaacatccaatacatccacaaaacattgacaggcaaggatctaaataaaagatgccaaaaca 2440904  T

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Target: chr6 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 6301516 - 6301611
Alignment:
Q  1 tagatagcaacagatgatccattacacctcaaaacatccattacatccacaaaaccttgacaggcaaggatctaaataaaaggtgccaaaacataa 96  Q
    |||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  6301516 tagatagcaacaaatgatccattacaccacaaaacatccaatacatccacaaaaccttgacagacaaggatctaaataaaagatgccaaaacataa 6301611  T

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Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 6308326 - 6308421
Alignment:
Q  1 tagatagcaacagatgatccattacacctcaaaacatccattacatccacaaaaccttgacaggcaaggatctaaataaaaggtgccaaaacataa 96  Q
    |||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  6308326 tagatagcaacaaatgatccattacaccacaaaacatccaatacatccacaaaaccttgacagacaaggatctaaataaaagatgccaaaacataa 6308421  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 340
Target Start/End: Original strand, 164023 - 164102
Alignment:
Q  260 ttcaacatcaaactctatgagatatctcctatatttcactcgcaacttgttgacaatcttctccaactcagatacaggatt 340  Q
    ||||||||||||||||||||||||  ||||||||||||| |||||||  |||| |||||| ||||||||||||||| ||||    
T  164023 ttcaacatcaaactctatgagataggtcctatatttcac-cgcaactcattgataatcttgtccaactcagatacatgatt 164102  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 341
Target Start/End: Original strand, 24468119 - 24468196
Alignment:
Q  264 acatcaaactctatgagatatctcctatatttcactcgcaacttgttgacaatcttctccaactcagatacaggattc 341  Q
    |||| |||||||||| ||||| ||||||||||||| |||||||  ||||||||||| |||||||||||||||||||||    
T  24468119 acattaaactctatgtgatatgtcctatatttcacccgcaactcattgacaatcttgtccaactcagatacaggattc 24468196  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 340
Target Start/End: Complemental strand, 18208386 - 18208307
Alignment:
Q  260 ttcaacatcaaactctatgagatatctcctatatttcactcgcaacttgttgacaatcttctccaactcagatacaggatt 340  Q
    ||||||||||||||||||||||||  ||||||||||||| |||||||  |||| |||||| ||||||||||||||| ||||    
T  18208386 ttcaacatcaaactctatgagataggtcctatatttcac-cgcaactcattgataatcttgtccaactcagatacatgatt 18208307  T

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