View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16652_low_13 (Length: 369)
Name: NF16652_low_13
Description: NF16652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16652_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 47580340 - 47580701
Alignment:
| Q |
1 |
gcaagtgcatggttatttgcacagcttctgacttcgagcactctatataacaacaagccagaaagcacacaaaatagttgccgcactgatcgtgctggtc |
100 |
Q |
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| T |
47580340 |
gcaagtgcatggttatttgcacagcttctgacttcgagcactctatataacaacaagccagaaagcacacaaaatagttgccgcactgatcgtgctggtc |
47580439 |
T |
|
| Q |
101 |
ttattagttctgctccatggtaagattgtcgacacattattacgttttctcaattatcaataaccttcatgccttttttgaattgaagtttgtttcataa |
200 |
Q |
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| T |
47580440 |
ttattagttctgctccatggtaagattgtcgacacattattacgttttctcaattatcaataaccttcatgccttttttgaattgaagtttgtttcataa |
47580539 |
T |
|
| Q |
201 |
gctataaacggaagcttaacctataatttacctttttatgcaactttaattaataaaattgattgcattatttatgcagggtgtattttccttacccttt |
300 |
Q |
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| T |
47580540 |
gctataaacggaagcttaacctataacttacctttttatgcaacttcaattaataaaattgattgcattatttatgcagggtgtattttccttacccttt |
47580639 |
T |
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| Q |
301 |
ccaatggggaagtcctaccttcaactatggggaaacttttgctatgataacagcttcctttg |
362 |
Q |
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| T |
47580640 |
ccaatggggaagtcctaccttcaactatggggaaacttttgctatgataacagcttcttttg |
47580701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 270 - 324
Target Start/End: Original strand, 8684396 - 8684450
Alignment:
| Q |
270 |
atttatgcagggtgtattttccttaccctttccaatggggaagtcctaccttcaa |
324 |
Q |
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| T |
8684396 |
atttatgtagggtgtattttccttaccctttccaatggggaagtcctactttcaa |
8684450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 8684131 - 8684220
Alignment:
| Q |
9 |
atggttatttgcacagcttctgacttcgagcactctatataacaacaagccagaaagcacacaaaatagttgccgcactgatcgtgctgg |
98 |
Q |
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||||||||||||||||||||| ||||| |||| ||||||| ||||| ||||||| ||||| | |||||||| |||||||| ||||| |
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| T |
8684131 |
atggttatttgcacagcttctaacttcttccactgcatataaccacaagtcagaaagtacacagaccagttgccgaactgatcgcgctgg |
8684220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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