View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16652_low_14 (Length: 354)
Name: NF16652_low_14
Description: NF16652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16652_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 12 - 338
Target Start/End: Original strand, 11384912 - 11385239
Alignment:
| Q |
12 |
ataggaatgtgatggagaatgcgataataactaaca-ttacaccctctaatcattattataagcaaacaaaagcttaaaaaattcacttctttaatatag |
110 |
Q |
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| T |
11384912 |
ataggaatatgatggagaatgcgataataactaacaattacaccctctaatcattattataagcaaacaaaagcttaaaaaattcacttctttaatattg |
11385011 |
T |
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| Q |
111 |
tgttactattttagtacgacgtttaaaaaagaatggatgaagtacttcattcgtcctttattataagtattcattttatgaaggcaaaatgatacttatt |
210 |
Q |
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| T |
11385012 |
tgttactattttagtacgacgtttaaaaaagaatggatgaagtacttcattcgtcctttattataagtattcattttatgaaggcaaaatgatacttatt |
11385111 |
T |
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| Q |
211 |
ataaaaaagactgagtaaccatatatttatagtttgttaaatattcaaacaaaccctaacatttgagacttctaatttctaggtgggaggatagatagtt |
310 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11385112 |
ataaaaaagactgagtgagcatatatttatagtttgttaaatattcaaacaaaccctaacatttgagacttctaatttctaggtgggaggatagatagtt |
11385211 |
T |
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| Q |
311 |
cagcttgttaagttaagagattaaaaaa |
338 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
11385212 |
cagcttgttaagttaagagattaaaaaa |
11385239 |
T |
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