View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16652_low_17 (Length: 316)
Name: NF16652_low_17
Description: NF16652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16652_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 16 - 294
Target Start/End: Original strand, 36136196 - 36136474
Alignment:
| Q |
16 |
gtattgacattgtatgtgatcagaatatacctctatattgatgtctgaattttgataactgcagcgaagtttgatgttgcaatatcaacagcatgttctg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36136196 |
gtattgacattgtatgtgatcagaatatacctctatattgatgtctgaattttgataactgcagcgaagtttgatgttgcaatatcaacagcatgttctg |
36136295 |
T |
|
| Q |
116 |
ggcttgactatattgtggtggaaacaacaactgcagcacaagcctctgttgagttacttcgcagggagaatcttggtgttgctactttcatgatattggt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36136296 |
ggcttgactatattgtggtggaaacaacaactgcagcacaagcctgtgttgagttacttcgcagggagaatcttggtgttgctactttcatgatattggt |
36136395 |
T |
|
| Q |
216 |
atctattttattgttgttactagcggaaagactagccacttttctgttgcgcttaattgtatgtggaaagagatatcaa |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36136396 |
atctattttattgttgttactagcggaaagactagccgcttttctgttgcgcttaattgtatgtggaaagagatatcaa |
36136474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 23 - 226
Target Start/End: Original strand, 30817591 - 30817792
Alignment:
| Q |
23 |
cattgtatgtgatcagaatatacctctatattgatgtctgaattttgataactgcagcgaagtttgatgttgcaatatcaacagcatgttctgggcttga |
122 |
Q |
| |
|
|||||||||| ||||| |||||| | ||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30817591 |
cattgtatgtcatcag--tataccacaatattgacgtctgaaatttgataactgcagcaaagtttgatgttgcaatatcaacagcatgttctgggcttga |
30817688 |
T |
|
| Q |
123 |
ctatattgtggtggaaacaacaactgcagcacaagcctctgttgagttacttcgcagggagaatcttggtgttgctactttcatgatattggtatctatt |
222 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||| ||||||||| ||||| || ||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
30817689 |
ctatattgtcgtggaaacaacaaatgcagcacaagcctgtgttgagttgcttcgtagagagaatcttggcgttgctactttcatgatattggtatttatt |
30817788 |
T |
|
| Q |
223 |
ttat |
226 |
Q |
| |
|
|||| |
|
|
| T |
30817789 |
ttat |
30817792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University