View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16652_low_18 (Length: 313)
Name: NF16652_low_18
Description: NF16652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16652_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 43733411 - 43733687
Alignment:
| Q |
11 |
cataggtacacaattttcataattaacgatcatattatatatatgtacgaagtacacaatttcgtgaaagaaactaactagctttttatattatggtgtt |
110 |
Q |
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| T |
43733411 |
cataggtacacaattttcataattaacgatcatattatatatatgtacgaagtacacaatttcgtgaaagaaacta----gctttttatattatggtgtt |
43733506 |
T |
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| Q |
111 |
taaatgaatgattattattaatattattgcagcaaatgaggcattagctaagctggctagtgttgggcttataccaaacatgatattgtatttgactgaa |
210 |
Q |
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| T |
43733507 |
taaatgaatgattattatt------attgcagcaaatgaggcattagctaagctggctagtgttgggcttataccaaacatgatattgtatttgactgaa |
43733600 |
T |
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| Q |
211 |
gattacaggataagagtagtgaaagcaacaaaaattatgttcttatggttagcatctactaatttcagtccttctgtggctgctttt |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43733601 |
gattacaggataagagtagtgaaagcaacaaaaattatgttcttatggttagcagctactaatttcagtccttctgtggctgctttt |
43733687 |
T |
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