View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16652_low_2 (Length: 685)
Name: NF16652_low_2
Description: NF16652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16652_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 614; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 18 - 679
Target Start/End: Complemental strand, 13421386 - 13420725
Alignment:
| Q |
18 |
gagaggacatctattttctaattaattgatataataataactaccaacatataattaaaaacattttcattataagaaccattctaaaatcactgaataa |
117 |
Q |
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| T |
13421386 |
gagaggacatctattttctaattaattgatataataataactaccaacatataattaaaaacattttcattataagaaccattctaaaatcactgaataa |
13421287 |
T |
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| Q |
118 |
tttaaagacctccaagtgttttttgaagtgaaaaaacatttcacatcgcttgaaaactaatgatattgatcatgttgatatannnnnnnnaagcaaagtg |
217 |
Q |
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| T |
13421286 |
tttaaagacctccaagtgttttttgaagtgaaaaaacatttcacatagcttgaaaactaatgatattgatcatgttgatatattttttttaagcaaagtg |
13421187 |
T |
|
| Q |
218 |
agtagcaaggagctaactcacctaaatagattacccaaagaagattggtagaaaaggaagagctttctctaagagtaaatgaatctttaattaggcattt |
317 |
Q |
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| T |
13421186 |
agtagcaaggagctaactcacctaaatagattacccaaagaagattggtagaaaaggaagaactttctctaagagtaaatgaatctttaattaggcattt |
13421087 |
T |
|
| Q |
318 |
ctattctattttttaacataggtttctgtgactgctgaaggaacatcactatagaaaacaaaagagttcaaagaaagccctgtattagcaaaaatgtgtg |
417 |
Q |
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| T |
13421086 |
ctattctattttttaacataggtttctgtgactgctgaaggaacatcactatagaaaacaaaagagttcaaagaaagccctgtattagcaaaaatgtgtg |
13420987 |
T |
|
| Q |
418 |
cacaacaattctcctctttctctatagatatgagttacgatgaagttcatgcttcaagataggagaagatagttgtgccacctttgttacaatgagttac |
517 |
Q |
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| T |
13420986 |
cacaacaattctcctctttctctatggatatgagttacgatgaagttcatgcttcaagataggagaagatagttgtgccacctttgttacaatgagttac |
13420887 |
T |
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| Q |
518 |
aaaggagatagtgtgtttaacaagtggactaaaatgccgtcaagtaccaatgtttgtataagttcttctctatatggattgtgaaatttctacataagga |
617 |
Q |
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| T |
13420886 |
aaaggagatagtgtgtttaacaagtggactaaaatgccgtcaagtaccaatgtttgcataagttcttctctatatggattgtgaaatttctacataagga |
13420787 |
T |
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| Q |
618 |
ctatgaatatgattagaattatgtaagggggttgcaataggcaagggttgtattgatgatgt |
679 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13420786 |
ctatcaatatgattagaattatgtaagggggttgcaataggcaagggttgtattgacgatgt |
13420725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 575 - 641
Target Start/End: Original strand, 15769686 - 15769752
Alignment:
| Q |
575 |
ataagttcttctctatatggattgtgaaatttctacataaggactatgaatatgattagaattatgt |
641 |
Q |
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||||||| ||||| ||| ||||||||||||| |||||||| || |||||| ||||||||||||||| |
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| T |
15769686 |
ataagtttttctccatagggattgtgaaattcctacataactacaatgaatgtgattagaattatgt |
15769752 |
T |
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