View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16652_low_23 (Length: 264)
Name: NF16652_low_23
Description: NF16652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16652_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 41451957 - 41451710
Alignment:
| Q |
1 |
gtttgtggtactgttggatcaggaaagtctactttactttcttgtgtattgggagaagtaccgaagatatcaggcgtccttaaggtttgtggaacaaagg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41451957 |
gtttgtggtactgttggatcaggaaagtctactttactttcttgtgtattgggagaagtaccgaagatatcaggcgtccttaaggtttgtggaacaaagg |
41451858 |
T |
|
| Q |
101 |
cctatgtcgctcaatcaccatggattcaaagtggcaagatagaggataatatattgtttggtgaaaacatggttagggaaaggtatgaaaaggtacttga |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41451857 |
cctatgtcgctcaatcaccatggattcaaagtggcaagatagaggataatatattgtttggtgaaaacatggttagggaaaggtatgaaaaggtacttga |
41451758 |
T |
|
| Q |
201 |
agcatgttccttgaagaaggatttggaaatcttgtcatttggtgatca |
248 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41451757 |
agcatgttccttgaagaaggatttggaaatcttgtcatttggtgatca |
41451710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 41438788 - 41438541
Alignment:
| Q |
1 |
gtttgtggtactgttggatcaggaaagtctactttactttcttgtgtattgggagaagtaccgaagatatcaggcgtccttaaggtttgtggaacaaagg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41438788 |
gtttgtggtactgttggatcaggaaagtctactttactttcttgtgtattgggagaagtaccgaagatatcaggcgtccttaaggtttgtggaaaaaagg |
41438689 |
T |
|
| Q |
101 |
cctatgtcgctcaatcaccatggattcaaagtggcaagatagaggataatatattgtttggtgaaaacatggttagggaaaggtatgaaaaggtacttga |
200 |
Q |
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||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41438688 |
cctatgttgctcaattaccatggattcaaagtggcaagatagaggataatatattatttggtgaaaacatggttagggaaaggtatgaaaaggtacttga |
41438589 |
T |
|
| Q |
201 |
agcatgttccttgaagaaggatttggaaatcttgtcatttggtgatca |
248 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
41438588 |
agcatgtaccttgaagaaggatttagaaatcttgtcatttggtgatca |
41438541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 14372410 - 14372657
Alignment:
| Q |
1 |
gtttgtggtactgttggatcaggaaagtctactttactttcttgtgtattgggagaagtaccgaagatatcaggcgtccttaaggtttgtggaacaaagg |
100 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||| |
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| T |
14372410 |
gtttgtggtactgttggatcaggcaagtctactttactttcatgtgtattgggagaagtaccaaagatatcaggcatccttaaagtttgtggaacaaagg |
14372509 |
T |
|
| Q |
101 |
cctatgtcgctcaatcaccatggattcaaagtggcaagatagaggataatatattgtttggtgaaaacatggttagggaaaggtatgaaaaggtacttga |
200 |
Q |
| |
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||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||| | ||||||||| |
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| T |
14372510 |
cctatgttgctcaatcaccatggattcaaagtggcacgatagaggataatatattgtttggtgaacacatggttaaggaaaggtatgagatggtacttga |
14372609 |
T |
|
| Q |
201 |
agcatgttccttgaagaaggatttggaaatcttgtcatttggtgatca |
248 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| ||||||||||||||||| |
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|
| T |
14372610 |
agcatgttccctgaagaaggatctggaaatattgtcatttggtgatca |
14372657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 14240948 - 14240701
Alignment:
| Q |
1 |
gtttgtggtactgttggatcaggaaagtctactttactttcttgtgtattgggagaagtaccgaagatatcaggcgtccttaaggtttgtggaacaaagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||| ||||| |
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| T |
14240948 |
gtttgtggtactgttggatcaggaaagtctactttactttcttgtgtactgggagaagtaccaaagatatcaggcgttgttaaggtttgtggagaaaagg |
14240849 |
T |
|
| Q |
101 |
cctatgtcgctcaatcaccatggattcaaagtggcaagatagaggataatatattgtttggtgaaaacatggttagggaaaggtatgaaaaggtacttga |
200 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||| || |
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| T |
14240848 |
cctacgttgctcaatcaccatggattcaaagtggcaagatagaggataatatattgtttggcaaacaaatggttagggaaaggtatgaaaaggtactcga |
14240749 |
T |
|
| Q |
201 |
agcatgttccttgaagaaggatttggaaatcttgtcatttggtgatca |
248 |
Q |
| |
|
||| || | ||| ||||||||| ||||||||||||||||||||||||| |
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| T |
14240748 |
agcttgctacttaaagaaggatctggaaatcttgtcatttggtgatca |
14240701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 22727346 - 22727129
Alignment:
| Q |
1 |
gtttgtggtactgttggatcaggaaagtctactttactttcttgtgtattgggagaagtaccgaagatatcaggcgtccttaaggtttgtggaacaaagg |
100 |
Q |
| |
|
||||||||||| ||||||||||| ||||| | |||| |||||||| || | || ||| ||||||||||||| || | | ||||||||||||||||||| |
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| T |
22727346 |
gtttgtggtacagttggatcaggcaagtcgagtttaatttcttgtataattggggaaataccgaagatatctgggaacttgaaggtttgtggaacaaagg |
22727247 |
T |
|
| Q |
101 |
cctatgtcgctcaatcaccatggattcaaagtggcaagatagaggataatatattgtttggtgaaaacatggttagggaaaggtatgaaaaggtacttga |
200 |
Q |
| |
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| ||||| ||||||||||| ||||| || |||||||||||||| ||||||||| | |||||| | | |||| |||||||| |||| | ||||| || || |
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| T |
22727246 |
cttatgttgctcaatcaccgtggatacagagtggcaagatagaagataatatactatttggtagagagatggatagggaaaagtattagaaggttctaga |
22727147 |
T |
|
| Q |
201 |
agcatgttccttgaagaa |
218 |
Q |
| |
|
||||||||| |||||||| |
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|
| T |
22727146 |
agcatgttcattgaagaa |
22727129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 22739637 - 22739854
Alignment:
| Q |
1 |
gtttgtggtactgttggatcaggaaagtctactttactttcttgtgtattgggagaagtaccgaagatatcaggcgtccttaaggtttgtggaacaaagg |
100 |
Q |
| |
|
||||||||||| ||||||||||| ||||| | ||||||||||||| || | || ||| ||||||||||||| || | | || || ||||||||||||| |
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| T |
22739637 |
gtttgtggtacggttggatcaggcaagtcgagtttactttcttgtataattggtgaaataccgaagatatctgggaacttgaaagtgtgtggaacaaagg |
22739736 |
T |
|
| Q |
101 |
cctatgtcgctcaatcaccatggattcaaagtggcaagatagaggataatatattgtttggtgaaaacatggttagggaaaggtatgaaaaggtacttga |
200 |
Q |
| |
|
| ||||| |||||||| |||||||| || |||||||||||||| || |||||| | |||||| | | |||| || ||||| |||||| ||||| || || |
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|
| T |
22739737 |
cttatgttgctcaatcgccatggatacagagtggcaagatagaagagaatatactatttggtagagagatggataaggaaaagtatgagaaggttctaga |
22739836 |
T |
|
| Q |
201 |
agcatgttccttgaagaa |
218 |
Q |
| |
|
||||||||| |||||||| |
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| T |
22739837 |
agcatgttcattgaagaa |
22739854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 2 - 248
Target Start/End: Complemental strand, 22750664 - 22750418
Alignment:
| Q |
2 |
tttgtggtactgttggatcaggaaagtctactttactttcttgtgtattgggagaagtaccgaagatatcaggcgtccttaaggtttgtggaacaaaggc |
101 |
Q |
| |
|
|||||||||| |||||||| ||||| ||||| |||||||| |||||||| ||||||||||| ||||||||||| | | || || ||||| |||||||| |
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|
| T |
22750664 |
tttgtggtacagttggatcgggaaaatctacgttactttcatgtgtattaggagaagtaccaaagatatcagggattttaaaagtgtgtggtacaaaggc |
22750565 |
T |
|
| Q |
102 |
ctatgtcgctcaatcaccatggattcaaagtggcaagatagaggataatatattgtttggtgaaaacatggttagggaaaggtatgaaaaggtacttgaa |
201 |
Q |
| |
|
||||| || || || |||||||| |||||| |||||||||| |||| ||||||||||| | | |||| ||| |||| ||||| ||||| |||||| |
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|
| T |
22750564 |
ttatgtagcacagtcgccatggatacaaagtagcaagatagaaaataacatattgtttgggaaggatatggaaaggcaaagatatgagaaggttcttgaa |
22750465 |
T |
|
| Q |
202 |
gcatgttccttgaagaaggatttggaaatcttgtcatttggtgatca |
248 |
Q |
| |
|
|||||||| | ||||||||| | || || || |||||||| ||||| |
|
|
| T |
22750464 |
gcatgttcactaaagaaggatctcgagattttatcatttggcgatca |
22750418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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