View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16652_low_28 (Length: 224)
Name: NF16652_low_28
Description: NF16652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16652_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 26788375 - 26788190
Alignment:
| Q |
21 |
atcggatacatcacaataatctcaacgagtattccaactgcaattgaacagatgcagaaatttccaattgctgtaagcactttttgaaagtgtccaactt |
120 |
Q |
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| T |
26788375 |
atcggatacatcacaataatctcaacgagtattccaactgcaattgaacagatgcagaaatttccaattgctgtaagcactttttgaaagtgtccaactt |
26788276 |
T |
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| Q |
121 |
gattagtactgtcaaccaaatgagctgcttttccgaaaaaggtgtggacaccagttgcatacacaattgcttcgatctcacccttc |
206 |
Q |
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| T |
26788275 |
gattagtactgtcaaccaaatgagctgcttttccgaaaaaggtgtggacaccagttgcatacacaattgcttcgatctcacccttc |
26788190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 1460806 - 1460621
Alignment:
| Q |
21 |
atcggatacatcacaataatctcaacgagtattccaactgcaattgaacagatgcagaaatttccaattgctgtaagcactttttgaaagtgtccaactt |
120 |
Q |
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| T |
1460806 |
atcggatacatcacaataatctcaatgagtattccaacagcaattgaacaaatacagaaatttccaattgctgtaagcacttgttgaaagtgtccaactt |
1460707 |
T |
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| Q |
121 |
gattagtactgtcaaccaaatgagctgcttttccgaaaaaggtgtggacaccagttgcatacacaattgcttcgatctcacccttc |
206 |
Q |
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| T |
1460706 |
ggttagtactatcaaccaaatgagctgctttgccgaaaaaggtgtggacaccagttgcatacacaattgcttcaatctcacccttc |
1460621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 21 - 206
Target Start/End: Original strand, 1498530 - 1498715
Alignment:
| Q |
21 |
atcggatacatcacaataatctcaacgagtattccaactgcaattgaacagatgcagaaatttccaattgctgtaagcactttttgaaagtgtccaactt |
120 |
Q |
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| T |
1498530 |
atcggatacatcactataagctcaaccaatattccaatagcgattgaacaaatgcagaagtttccaattgctgtaagcactttctgaaagtgtccaactt |
1498629 |
T |
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| Q |
121 |
gattagtactgtcaaccaaatgagctgcttttccgaaaaaggtgtggacaccagttgcatacacaattgcttcgatctcacccttc |
206 |
Q |
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|||||||||| |||||||||||||| ||||| |||||||| || || |||||||| ||| |||| |||||| |||||||||||| |
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| T |
1498630 |
gattagtactatcaaccaaatgagccgctttaccgaaaaaagtatgcacaccagtagcaataacaactgcttcaatctcacccttc |
1498715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 48 - 202
Target Start/End: Complemental strand, 50274596 - 50274442
Alignment:
| Q |
48 |
agtattccaactgcaattgaacagatgcagaaatttccaattgctgtaagcactttttgaaagtgtccaacttgattagtactgtcaaccaaatgagctg |
147 |
Q |
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| T |
50274596 |
agtattccaacagcaattgagcaaatgcagaaattaccaattgctgttaggactttctgaaagtgaccaacttgattggtgctgtcaaccaaatgagcag |
50274497 |
T |
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| Q |
148 |
cttttccgaaaaaggtgtggacaccagttgcatacacaattgcttcgatctcacc |
202 |
Q |
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| T |
50274496 |
ctttaccaaaaaatgtgtgcactccagtagcaattacaactgcttcaatctcacc |
50274442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 53077035 - 53077160
Alignment:
| Q |
54 |
ccaactgcaattgaacagatgcagaaatttccaattgctgtaagcactttttgaaagtgtccaacttgattagtactgtcaaccaaatgagctgcttttc |
153 |
Q |
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| T |
53077035 |
ccaactgcaatcgaacaaatgcagaagtttccaattgcagtaagcaccttctgaaaatgcccaacttggttggtactgtccacaaggtgagctgctttcc |
53077134 |
T |
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| Q |
154 |
cgaaaaaggtgtggacaccagttgca |
179 |
Q |
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||||||| |||||||||||||||||| |
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| T |
53077135 |
cgaaaaatgtgtggacaccagttgca |
53077160 |
T |
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