View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16652_low_29 (Length: 215)
Name: NF16652_low_29
Description: NF16652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16652_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 3e-96; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 11275099 - 11274898
Alignment:
| Q |
1 |
agtacgcatacaatataagggatttcataaatgatccggatattagctcgaagctttccttaaaagaaaaggaaaacatcaataacgcaactgatttggt |
100 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
11275099 |
agtacgcatacaatatgagggatttcataaatgatcccgatattatctcgaagctttcattaaaagaaaaggaaaacatcaataatgcaactgatttggt |
11275000 |
T |
|
| Q |
101 |
ctttaagtggcttgacgttaatgtggttgcagaacaacaagattttgaatgttataggagcattctttcaagtgtgtttgacccaattgttataaagatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
11274999 |
ctttaagtggcttgacgttaatgtggttgcagaacaacaagattttgaatgttataggagcattctttcaagtgtgtttgatccaattgttataaagatg |
11274900 |
T |
|
| Q |
201 |
at |
202 |
Q |
| |
|
|| |
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|
| T |
11274899 |
at |
11274898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 2 - 202
Target Start/End: Complemental strand, 11169714 - 11169514
Alignment:
| Q |
2 |
gtacgcatacaatataagggatttcataaatgatccggatattagctcgaagctttccttaaaagaaaaggaaaacatcaataacgcaactgatttggtc |
101 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||| | ||||||||||| |||||||||||||||||||||||||||| |
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| T |
11169714 |
gtacgcatacaatatgagggaattcataaatgatccggatattagctcgaagatttcgtcaaaagaaaaggcaaacatcaataacgcaactgatttggtc |
11169615 |
T |
|
| Q |
102 |
tttaagtggcttgacgttaatgtggttgcagaacaacaagattttgaatgttataggagcattctttcaagtgtgtttgacccaattgttataaagatga |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11169614 |
tttaagtggcttgacgttaatgtggttgcagaacaacaagattttgaacattatagtagcattctttcaagtgtgtttgatccaattgttataaagatga |
11169515 |
T |
|
| Q |
202 |
t |
202 |
Q |
| |
|
| |
|
|
| T |
11169514 |
t |
11169514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 11208537 - 11208336
Alignment:
| Q |
1 |
agtacgcatacaatataagggatttcataaatgatccggatattagctcgaagctttccttaaaagaaaaggaaaacatcaataacgcaactgatttggt |
100 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||| || |||||||||||||||| | ||||||||||||||| |||||||||||| ||||||||| |
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| T |
11208537 |
agtacgcatacaatatgagggattccataaatgatccagaagttagctcgaagctttcgtcaaaagaaaaggaaaagatcaataacgcagttgatttggt |
11208438 |
T |
|
| Q |
101 |
ctttaagtggcttgacgttaatgtggttgcagaacaacaagattttgaatgttataggagcattctttcaagtgtgtttgacccaattgttataaagatg |
200 |
Q |
| |
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||| | ||||||||||| |||| ||| | |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| || | |||||| |
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|
| T |
11208437 |
cttcatgtggcttgacgctaataaggtagtagaacaacaagattttgagtgttataggagcattctttcaagtgtgtttgatccaattattttgaagatg |
11208338 |
T |
|
| Q |
201 |
at |
202 |
Q |
| |
|
|| |
|
|
| T |
11208337 |
at |
11208336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 2 - 137
Target Start/End: Complemental strand, 11165487 - 11165352
Alignment:
| Q |
2 |
gtacgcatacaatataagggatttcataaatgatccggatattagctcgaagctttccttaaaagaaaaggaaaacatcaataacgcaactgatttggtc |
101 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||| ||| |||||||||||||||| | ||||||||||||||| |||||||||||| |||||||||| |
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|
| T |
11165487 |
gtacgcatacaatatgagggattccataaatgatccagatgttagctcgaagctttcgtcaaaagaaaaggaaaatatcaataacgcagttgatttggtc |
11165388 |
T |
|
| Q |
102 |
tttaagtggcttgacgttaatgtggttgcagaacaa |
137 |
Q |
| |
|
|||||||||||||| | |||| ||||||||||||| |
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|
| T |
11165387 |
tttaagtggcttgaagataataaggttgcagaacaa |
11165352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 11242024 - 11242205
Alignment:
| Q |
1 |
agtacgcatacaatataagggatttcataaatgatccggatattagctcgaagctttccttaaaagaaaa--ggaaaacatcaataacgcaactgatttg |
98 |
Q |
| |
|
|||| |||||||| |||||| || |||||||||| ||||||| ||||||||||||| | ||| ||||| |||||| || ||||| |||| | ||||| |
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|
| T |
11242024 |
agtatgcatacaacataaggaatgccataaatgataaggatatttgctcgaagctttcgtaaaacgaaaaaaggaaaagattaataaagcaatt-atttg |
11242122 |
T |
|
| Q |
99 |
gtctttaagtggcttgacgttaatgtggttgcagaacaacaagattttgaatgttataggagcattctttcaagtgtgtttga |
181 |
Q |
| |
|
||||| | |||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11242123 |
gtcttcacatggcttgatgttaatgtggttgaagaacaacgagattttgaatgttataggagcattctttcaagtgtgtttga |
11242205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 27 - 181
Target Start/End: Complemental strand, 11155410 - 11155256
Alignment:
| Q |
27 |
ataaatgatccggatattagctcgaagctttccttaaaagaaaaggaaaacatcaataacgcaactgatttggtctttaagtggcttgacgttaatgtgg |
126 |
Q |
| |
|
||||||||| ||||||||| | || |||||| | ||||||||||||||| |||||||| ||| |||||||||||||| |||||| || ||||| ||| |
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|
| T |
11155410 |
ataaatgataaggatattagtttgatgctttcgtcaaaagaaaaggaaaagatcaataatgcacttgatttggtctttacgtggctcgatgttaacgtga |
11155311 |
T |
|
| Q |
127 |
ttgcagaacaacaagattttgaatgttataggagcattctttcaagtgtgtttga |
181 |
Q |
| |
|
|||| |||||| || | ||||| | ||||| |||||||||||||||||| ||||| |
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|
| T |
11155310 |
ttgcggaacaagaacaatttgagtattatacgagcattctttcaagtgtatttga |
11155256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 27 - 181
Target Start/End: Complemental strand, 11195857 - 11195703
Alignment:
| Q |
27 |
ataaatgatccggatattagctcgaagctttccttaaaagaaaaggaaaacatcaataacgcaactgatttggtctttaagtggcttgacgttaatgtgg |
126 |
Q |
| |
|
||||||||| ||| ||||| | || |||||| | ||||||||||||||| |||||||| |||| |||||||||||| | |||||| || ||||| |||| |
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|
| T |
11195857 |
ataaatgataaggacattagtttgatgctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttggtcttcatgtggctcgatgttaacgtgg |
11195758 |
T |
|
| Q |
127 |
ttgcagaacaacaagattttgaatgttataggagcattctttcaagtgtgtttga |
181 |
Q |
| |
|
|||| |||||| || | ||||| | ||||| |||||||||||||||||| ||||| |
|
|
| T |
11195757 |
ttgcggaacaagaacaatttgagtattatacgagcattctttcaagtgtatttga |
11195703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 181
Target Start/End: Complemental strand, 11132105 - 11131974
Alignment:
| Q |
50 |
gaagctttccttaaaagaaaaggaaaacatcaataacgcaactgatttggtctttaagtggcttgacgttaatgtggttgcagaacaacaagattttgaa |
149 |
Q |
| |
|
||||||||| ||| |||| |||||| ||| ||||| ||| ||||| |||||| ||||||||||| |||||| ||| ||||||||| |||||||| |
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|
| T |
11132105 |
gaagctttcgttagaagacaaggaagtgatcgataacacaattgattcggtcttactgtggcttgacgacaatgtgattgtagaacaacatgattttgag |
11132006 |
T |
|
| Q |
150 |
tgttataggagcattctttcaagtgtgtttga |
181 |
Q |
| |
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| ||||| || | | ||||||||||||||||| |
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|
| T |
11132005 |
tattatacgaacttactttcaagtgtgtttga |
11131974 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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