View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16652_low_3 (Length: 665)

Name: NF16652_low_3
Description: NF16652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16652_low_3
NF16652_low_3
[»] chr7 (1 HSPs)
chr7 (15-649)||(44693658-44694307)


Alignment Details
Target: chr7 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 15 - 649
Target Start/End: Original strand, 44693658 - 44694307
Alignment:
Q  15 atgaaagggacaatttcccaaaatgataggaatacaaacgagaaacacacgctggttttgtgtttcacgtacacgtcactaatttcagccatgcagttgc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44693658 atgaaagggacaatttcccaaaatgataggaatacaaacgagaaacacacgctggttttgtgtttcacgtacacgtcactaatttcagccatgcagttgc 44693757  T
Q  115 tgcacgtggcacttccttgaaatcacgtgctttcctacgaaaccttgaaaacgaaacgagagatttgcactaacaagcacgtgcaataatcacttaagta 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  44693758 tgcacgtggcacttccttgaaatcacgtgctttcctacgaaaccttgaaaacgaaacgagagatttgcactaacaagcacgtgcaataatcactta---- 44693853  T
Q  215 ttttaaaacatttcttccccagaaaagtaaaatttctttcagaattcgaaattgaaactacttacgctatcagcatcaccaccaccaccctgagattat- 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||     
T  44693854 ttttaaaacatttcttccccagaaaagtaaaatttctttcagaattcgaaattgaaactacttacgctatcagcatcaccaccacc---ctgagattatc 44693950  T
Q  314 ------------------atcaatttaactatctgtttagttcaaagattccataaccatattcatataatctttaaaaacaatggatactttgtgttta 395  Q
                      ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  44693951 acagaacataatcgttatatcaatttaactatctgtttagttcaaagattccataaccatattcatacaatctttaaaaacaatggttactttgtgttta 44694050  T
Q  396 ttacaaagtgggattcctggtatagttcctttaatcacttctattactgcaaccactactacttcacgtgccaatgatcacgttcacgtgcatcaatctc 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44694051 ttacaaagtgggattcctggtatagttcctttaatcacttctattagtgcaactactactacttcacgtgccaatgatcacgttcacgtgcatcaatctc 44694150  T
Q  496 acgtaaccacagtgaggcgatcaaacaagtcctccatgttttccagattcataggtagctccgccagaaacaattgcctt---gcagtcaacgacgcctt 592  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  44694151 acgtaaccacagtgaggcgatcaaacaagtcctccatgttttccagattcataggtagctccgccagaaacaattgccttgcagcagtcaacgacgcctt 44694250  T
Q  593 taccgcggagaatgcagacagagctgtgaaagaaggagatggacaaaatgggaactg 649  Q
     ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  44694251 caccgcggagaatgcagacagaactgtgaaagaaggagatggacaaaatgggaactg 44694307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University