View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16652_low_4 (Length: 623)
Name: NF16652_low_4
Description: NF16652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16652_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 558; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 1 - 607
Target Start/End: Complemental strand, 36323551 - 36322945
Alignment:
| Q |
1 |
caacaagtagagaccaatcaagagaaaagcttcatggttgccactaattttttcacacactgcatttttgtcatagaggttgcatatggctggttttagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36323551 |
caacaagtagagaccaatcaagagaaaagcttcatggttgccactaattttttcacacactgcatttttgtcatagaggttgcatatggctggttttagg |
36323452 |
T |
|
| Q |
101 |
ttagggtaatgtgcttgtaccgtgagtaacgccagtccctgcaacataattcacaatatatagacttcattacattacttgtaattgataagttttaaat |
200 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36323451 |
ttagggtaatgtgcttgtactgtgagtaacgccagtccctgcaacataattcacaatatatagacttcattacattacttgtaattgataagttttaaat |
36323352 |
T |
|
| Q |
201 |
aggctaaagaatttaaaatattttgcggtcaggtatttgaggaaaatttttattcatatgcatttacagaatcattagttaactacaatggctcgctcga |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36323351 |
aggctaaagaatttaaaatattttgcggtcaggtatttgaggaaaatttttattcatatgcatttacagaatcattagttaactacaatggctcgctcga |
36323252 |
T |
|
| Q |
301 |
tctttagaaaaaatttacacatattcgtataacaaattatgaaaatgatatgcatattttaaccgaggtttgccattaatctttagctacacatacacac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
36323251 |
tctttagaaaaaatttacacatattcgtattacaaattatgaaaatgatatgcatgtttaaaccgaggtttgccattaatctttagctacacatacacac |
36323152 |
T |
|
| Q |
401 |
atgagttttgttttttgttaacaatgtttgtccatgttgcttctcccaagggtccnnnnnnnggggaggtcaaccttctcctaagcttaaaatgagctca |
500 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
36323151 |
atgaattttgttttttgttaacaatgtttgtccatgttgcttctcccaagggtcctttttttggggaggtcaaccttctcctaagcttaaaatgagctca |
36323052 |
T |
|
| Q |
501 |
accatcgatcctaatgggagctccgccgccgggcgaccatcatcaaccaccaccaatataatggtgtcaaacgtttgtcacatgctctatataatataag |
600 |
Q |
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|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36323051 |
accatcgatcctaatgggagctccgctgccgggcgaccatcatcaaccaccaccaatataatggtgtcaaacatttgtcacatgctctatataatataag |
36322952 |
T |
|
| Q |
601 |
gaaattg |
607 |
Q |
| |
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||||||| |
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| T |
36322951 |
gaaattg |
36322945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 36330397 - 36330240
Alignment:
| Q |
1 |
caacaagtagagaccaatcaagagaaaagcttcatggttgccactaattttttcacacactgcatttttgtcatagaggttgcatatggctggttttagg |
100 |
Q |
| |
|
||||||||| |||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||| || |
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|
| T |
36330397 |
caacaagtatagactaatgaagagaaaagcttcatggttgccattaattttttcacacactgcatttttgtcaagtaagttgcatatggctggtttcaga |
36330298 |
T |
|
| Q |
101 |
ttagggtaatgtgcttgtaccgtgagtaacgccagtccctgcaacataattcacaata |
158 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||| |
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|
| T |
36330297 |
ttagggtaatgtgcttgtactgtgagtaacgccagtccctgcagcatagttcacaata |
36330240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 37919899 - 37919830
Alignment:
| Q |
1 |
caacaagtagagaccaatcaagagaaaagcttcatggttgccactaattttttcacacactgcatttttg |
70 |
Q |
| |
|
||||| ||| |||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
37919899 |
caacacgtatagactaatgaagagaaaagcttcatggttgccactaattttttcacgcactgcatttttg |
37919830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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