View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16652_low_5 (Length: 596)
Name: NF16652_low_5
Description: NF16652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16652_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 17 - 586
Target Start/End: Complemental strand, 49386041 - 49385472
Alignment:
| Q |
17 |
aaggttttgatcatttttactagtgtgtgcagtgttaaggtgagaaagagtagtattttgattggtttgagtgttagtgagtaactgtgaagctggtaag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49386041 |
aaggttttgatcatttttactagtgtgtgcagtgttaaggtgagaaagagtagtattttgattggtttgagtgttagtgagtaactgtgaagctggtaag |
49385942 |
T |
|
| Q |
117 |
agagtttgaagatccataggagaagaaacaagtgtgtgaaaattgatagtatcagagtaaatgaaattagttctagcttgatttcctttcatggaaatag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49385941 |
agagtttgaagatccataggagaagaaacaagtgtgtgaaaattgatagtatcagagtaaatgaaattagttctagcttgatttcctttcatggaaatag |
49385842 |
T |
|
| Q |
217 |
cagctctatcataagcaagagcagcttcttgagcagtatcaaaagtaccaagccaatgtctttctttagttgtagggtctctaatttcagcagcatatct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49385841 |
cagctctatcataagcaagagcagcttcttgagcagtatcaaaagtaccaagccaatgtctttctttagttgtagggtctctaatttcagcagcatatct |
49385742 |
T |
|
| Q |
317 |
accccaaggtcttctcctaacaccaagaaaccttcctggttctgattgtttccttcttcctcttttttcaccactaggtgatgtgtttgtgtttctttga |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49385741 |
accccaaggtcttctcctaacaccaagaaaccttcctggttctgattgtttccttcttcctcttttttcaccactaggtgatgtgtttgtgtttctttga |
49385642 |
T |
|
| Q |
417 |
agtagagacagacacatttgtgtttgatttgtttcatgatatcctttgaaagatgaatctgatgtgatctttttagaggttgacatggctgagaaaatgg |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49385641 |
agtagagacagacacatttgtgtttgatttgtttcatgatatcctttgaaagatgaatctgatgtgatctttttagaggttgacatggctgagaaaatgg |
49385542 |
T |
|
| Q |
517 |
caaagaaaatatggattgaataatgaggctgcagaaggtaagaatggttatgttatgacttatgatgatg |
586 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
49385541 |
caaagaaaatatggattgaataatgaggctgcagaaggtaagaatggttatgttatgacttgtgatgatg |
49385472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 6e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 201 - 390
Target Start/End: Original strand, 6507641 - 6507830
Alignment:
| Q |
201 |
cctttcatggaaatagcagctctatcataagcaagagcagcttcttgagcagtatcaaaagtaccaagccaatgtctttctttagttgtagggtctctaa |
300 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||| || || | |||||||||||||||||||| ||| ||||||| |
|
|
| T |
6507641 |
cctttgatggaaagagcagctctatcataagcaaaagcagcttcttgagcagtatcaaatgttcctaaccaatgtctttctttagttgcaggatctctaa |
6507740 |
T |
|
| Q |
301 |
tttcagcagcatatctaccccaaggtcttctcctaacaccaagaaaccttcctggttctgattgtttccttcttcctcttttttcaccac |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||| ||| || |||| ||||||||||| |||| |
|
|
| T |
6507741 |
tttcagcagcatatctaccccaaggtcttctccttacaccaagaaacttacctggttctgcttgcttttttctgcctcttttttcgccac |
6507830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 272
Target Start/End: Original strand, 4420145 - 4420202
Alignment:
| Q |
215 |
agcagctctatcataagcaagagcagcttcttgagcagtatcaaaagtaccaagccaa |
272 |
Q |
| |
|
||||||| |||||||||| | |||||||| || ||| |||||||| |||||||||||| |
|
|
| T |
4420145 |
agcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaa |
4420202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 272
Target Start/End: Complemental strand, 25986059 - 25986002
Alignment:
| Q |
215 |
agcagctctatcataagcaagagcagcttcttgagcagtatcaaaagtaccaagccaa |
272 |
Q |
| |
|
|||||||||||||||||| | ||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
25986059 |
agcagctctatcataagccaaagcagcttcttcagcagtgtcaaaagtaccaagccaa |
25986002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 487 - 535
Target Start/End: Original strand, 40001303 - 40001351
Alignment:
| Q |
487 |
ttttagaggttgacatggctgagaaaatggcaaagaaaatatggattga |
535 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
40001303 |
ttttagaagttgacatggctaagaaaatggcaaagaaaatatggattga |
40001351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 344
Target Start/End: Original strand, 43848271 - 43848378
Alignment:
| Q |
237 |
gcagcttcttgagcagtatcaaaagtaccaagccaatgtctttctttagttgtagggtctctaatttcagcagcatatctaccccaaggtcttctcctaa |
336 |
Q |
| |
|
|||||||||| ||||| ||||| || || | ||||||||| ||||| || ||||| ||||||||||| |||||||| ||||| |||||| | |||| |
|
|
| T |
43848271 |
gcagcttcttctgcagtgtcaaatgtgcctaaccaatgtctctctttggtataagggttcctaatttcagctgcatatcttccccatggtctttttctaa |
43848370 |
T |
|
| Q |
337 |
caccaaga |
344 |
Q |
| |
|
|||||||| |
|
|
| T |
43848371 |
caccaaga |
43848378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 33470033 - 33469977
Alignment:
| Q |
215 |
agcagctctatcataagcaagagcagcttcttgagcagtatcaaaagtaccaagcca |
271 |
Q |
| |
|
||||||| |||||||||| | ||| ||||||| ||| || ||||||||||||||||| |
|
|
| T |
33470033 |
agcagctttatcataagccaaagctgcttcttcagctgtgtcaaaagtaccaagcca |
33469977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University