View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16652_low_8 (Length: 493)
Name: NF16652_low_8
Description: NF16652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16652_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 94 - 477
Target Start/End: Original strand, 52178364 - 52178749
Alignment:
| Q |
94 |
caaaaatttcttgacttttgtcacacacaaaaaatcattctagacgttttatgcatcatgattcacgagctttattaagcaatatggcgtgtgttatgat |
193 |
Q |
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| T |
52178364 |
caaacatttcttgacttttgtcacacacaaaaaatcattctagacgttttatgcatcatgattcacgagctttattaagcaatatggcgtgtgttatgat |
52178463 |
T |
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| Q |
194 |
gttgaagaccttatttattagtctatttaaaatttattcacataaaacctaaaaattgttttctaatttacacccacttnnnnnnnntatataggtgt-- |
291 |
Q |
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| T |
52178464 |
gttgaagaccttatttattagtctatttaaaatttattcacataaaacctaaaaattgttttctaatttacacccacttaaaaaaaatatataggtgtgt |
52178563 |
T |
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| Q |
292 |
aaattagcaaacatgcagattttccattcgactgaaaaattattcatcatacatatcatgaagcaggtatgtatgtagatgttctagccaatataaattg |
391 |
Q |
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| T |
52178564 |
aaattagcaaacatgcagatttttcattcgactgaaaaatcattcatcatacatatcatgaagccggtatgtatgtagatgttctagccaatataaattg |
52178663 |
T |
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| Q |
392 |
tgattaggattctactttgattttctatgagtcctatcagattaagatcaatcatttatttttacttgatgttgctggattagtat |
477 |
Q |
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| T |
52178664 |
tgattaggattctactttgattttctatgagtcctatcagattaagatcaatcatttatttttacttgatgttgctggattagtat |
52178749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 52178307 - 52178384
Alignment:
| Q |
11 |
cacagacagcagttgaagtagactttgccaagcaaaagctttgtacattaaactcaacaaacatttcttgacttttgt |
88 |
Q |
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| T |
52178307 |
cacagacagcagttgaagtagactttgccaagcaaaagctttgtacattaaactcaacaaacatttcttgacttttgt |
52178384 |
T |
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