View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16653_high_2 (Length: 375)
Name: NF16653_high_2
Description: NF16653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16653_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 14 - 357
Target Start/End: Complemental strand, 32426944 - 32426597
Alignment:
| Q |
14 |
tgaacatacacaaaa-ttatatatgtatgtataatcatgattcacgaa---caatttacaagttcattcataacctgagaatttgtgtgcattgtgctag |
109 |
Q |
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| T |
32426944 |
tgaacatacacaaaaattatatatgtatgtataatcatgattcatgaagaacaatttacaagttcattcataacctgagaatttgtgtgcattgtgttag |
32426845 |
T |
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| Q |
110 |
atatcctgaatgttgaattggtgtgaattcatggtatacaagttcattcataacctgataatttgtttgtatcatgttacatatctttgtattgaatgct |
209 |
Q |
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| T |
32426844 |
atatcctgaatgttgaattggtgtgaattcatggtatacaagttcattcataacctgataatttgtttgtatcatgttacatatctttgtattgaatgct |
32426745 |
T |
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| Q |
210 |
gaatgggcgtgaattcaaggcattgccattgttggacttaatgaatgtgaaattatttccttatctgtcttttatcttatgtatctatttgcattgttat |
309 |
Q |
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| T |
32426744 |
gaatgggtgtgaattcaaggcattgccattgttggacttaatgaatgtgaaattatttccttatctgtcttttatcttatgtatctatttgcattgttat |
32426645 |
T |
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| Q |
310 |
aggggccggagattcgaaccggatttctcaaggatggaaagcctgtcc |
357 |
Q |
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| T |
32426644 |
aggggccggagattcgaaccggatttctcaaggatggaaagcctgtcc |
32426597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 40597539 - 40597494
Alignment:
| Q |
301 |
cattgttataggggccggagattcgaaccggatttctcaaggatgg |
346 |
Q |
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| T |
40597539 |
cattgttgtaggggcctgagattcgtactggatttctcaaggatgg |
40597494 |
T |
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