View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16653_low_1 (Length: 560)
Name: NF16653_low_1
Description: NF16653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16653_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 13 - 546
Target Start/End: Original strand, 45653625 - 45654158
Alignment:
| Q |
13 |
aatattcaaattgcagttctccttgaacatcacattgcagccagtaacaaaaacttcaatataaaataagaaatgtaatagcatactaagggaaacagaa |
112 |
Q |
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| T |
45653625 |
aatattcaaattgcagttctccttgaacatctcattgcagccagtaacaaaaacttcaatataaaataagaaatgtaatagcatactaagggaaacagaa |
45653724 |
T |
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| Q |
113 |
aacaaatgtggacataataataatacaatcaactatttctattacaggagaagcataaaaactgtacttataaatcagactatgcaataccaattccaat |
212 |
Q |
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| T |
45653725 |
aacaaatgtggacataataataatacaatcaactatttctattacaggagaagcataaaaactgtacttataaatcagactatgcaataccaattccaat |
45653824 |
T |
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| Q |
213 |
aaatagatgtaaaatagtatatcaatcaactatactaatagaaaagcaagtacctcatacaaaacaataacaacttgagcattatcccgagcagaatcat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
45653825 |
aaatagatgtaaaatagtatatcaatcaactatactaagagaaaagcaagtacctcatacaaaacaataacaacttgagcattatcacgagcagaatcat |
45653924 |
T |
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| Q |
313 |
atttttgtgcggttattcttgcattgatatcactgaggtgtgatgtgaccctctcgtgatcaagctttcgcaagatatggagaagagggctgatagatgt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45653925 |
atttttgtgcggttattcttgcattgatatcactgaggtgtgatgtgaccctctcgtgatcaagctttcgcaagatatggagaagagggccgatagatgt |
45654024 |
T |
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| Q |
413 |
agactcgtactcggtgttatacatgtcttgggcttgatgatgctgagaaatgcactgaagacagtggttcatttcatgagagattctgttccacaaccgt |
512 |
Q |
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| T |
45654025 |
agactcgtactcggtgttatacatgtcttgggcttgatgatgctgagaaatgcactgaaggcagtggttcatttcatgagagattctgttccacaaccgt |
45654124 |
T |
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| Q |
513 |
ctaagaggtgaatcgtggcggtcatctttgtagt |
546 |
Q |
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| T |
45654125 |
ctaagaggtgaatcgtggcggtcatctttgtagt |
45654158 |
T |
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