View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16653_low_3 (Length: 415)

Name: NF16653_low_3
Description: NF16653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16653_low_3
NF16653_low_3
[»] chr4 (13 HSPs)
chr4 (129-380)||(7628418-7628669)
chr4 (46-315)||(7636859-7637128)
chr4 (1-299)||(7615061-7615359)
chr4 (1-276)||(7606070-7606345)
chr4 (63-242)||(7656209-7656388)
chr4 (1-63)||(7628668-7628730)
chr4 (67-137)||(39070932-39071002)
chr4 (175-251)||(39097547-39097623)
chr4 (177-242)||(39075095-39075160)
chr4 (70-131)||(39087996-39088057)
chr4 (70-122)||(39097682-39097734)
chr4 (70-129)||(39091389-39091448)
chr4 (80-137)||(39082336-39082393)
[»] chr7 (3 HSPs)
chr7 (46-363)||(8936147-8936464)
chr7 (1-245)||(8941747-8941990)
chr7 (63-315)||(8913668-8913913)
[»] chr3 (2 HSPs)
chr3 (66-266)||(40147440-40147640)
chr3 (66-242)||(8102323-8102499)
[»] chr6 (2 HSPs)
chr6 (69-274)||(6500335-6500540)
chr6 (176-230)||(11968807-11968861)
[»] scaffold0190 (2 HSPs)
scaffold0190 (71-137)||(4435-4501)
scaffold0190 (176-274)||(4292-4390)
[»] chr8 (3 HSPs)
chr8 (70-131)||(15745020-15745081)
chr8 (166-246)||(15196335-15196415)
chr8 (178-240)||(34173991-34174053)


Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 129 - 380
Target Start/End: Complemental strand, 7628669 - 7628418
Alignment:
Q  129 tcgtagtggatataaaatgaaaggacttgttaatgtatttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggag 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7628669 tcgtagtggatataaaatgaaaggacttgttaatgtatttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggag 7628570  T
Q  229 gcaatgggaaatgaccctcaatttgtggatgttgtgtccaactaatgcaacgtgaggtgtgtaaaatcaatttgatacagtattgttcagatgcttcaat 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  7628569 gcaatgggaaatgaccctcaatttgtggatgttgtgtccaactaatgcaacgtgaggtgtgtaaaatcaatttggtgcagtattgttcagatgcttcaat 7628470  T
Q  329 ttggtttttgtgtgacaacccatgaataatttttttatgtccaagtctaagg 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7628469 ttggtttttgtgtgacaacccatgaataatttttttatgtccaagtctaagg 7628418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 46 - 315
Target Start/End: Complemental strand, 7637128 - 7636859
Alignment:
Q  46 aaaaacaatttcttagtcattagcagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtggatataaaa 145  Q
    ||||| |||||| ||  |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||    
T  7637128 aaaaataatttcatatccattagtagttctccatggtttgatgtttatggtaatgattttggatggggaaagcctctggcagttcgtagtggatataaaa 7637029  T
Q  146 tgaaaggacttgttaatgtatttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatgaccc 245  Q
    | || |||||| |||  |||||||| |||||||||||||||||||| ||||||||| | |||||||||   ||||||||||||| |||||||||||||||    
T  7637028 taaatggacttattacggtatttgccggaatagaagaaggtagtatagaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatgaccc 7636929  T
Q  246 tcaattt-gtggatgttgtgtccaactaatgcaacgtgaggtgtgtaaaatcaatttgatacagtattgtt 315  Q
     ||||||  |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||    
T  7636928 -caatttcatggatgttgtgtccaactaatgcagcgtgaggtgtgtaaaatcaatatgatacaatattgtt 7636859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 7615359 - 7615061
Alignment:
Q  1 tcttggttaaaaaatccaagctttcttaggataacc-aacatagccaaaaacaatttcttagtcattagcagttctccatggtttgatgtttatggtaat 99  Q
    |||||||||| |||||||||||||  |||| || || ||||| || ||||| |||||| ||| ||||||||||||||| |||||||||||||||||||||    
T  7615359 tcttggttaagaaatccaagctttgctagg-tatcctaacatggcaaaaaataatttcatagccattagcagttctccgtggtttgatgtttatggtaat 7615261  T
Q  100 gatttcggatggggaaagcctgtggcggttcgtagtggatataaaatgaaaggacttgttaatgtatttgctggaatagaagaaggtagtattgaccttc 199  Q
    ||||| || ||||||||||||||||| ||||||||||||||||||   || |||||| |||  || |||||||||||||||||||||||||| || ||||    
T  7615260 gattttggttggggaaagcctgtggcagttcgtagtggatataaaggaaatggacttattacggtttttgctggaatagaagaaggtagtatagatcttc 7615161  T
Q  200 aaatctgtcttccttacgagattttggaggcaatgggaaatgaccctcaatttgtggatgttgtgtccaactaatgcaacgtgaggtgtgtaaaatcaat 299  Q
    || | |||||| |  | |||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||| ||| |||||||||||||||    
T  7615160 aagtttgtctttcacatgagattttggaggcaatgggaaatgaccctcaattcatggatgttgcgtccaactaatgcaacatgatgtgtgtaaaatcaat 7615061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 7606345 - 7606070
Alignment:
Q  1 tcttggttaaaaaatccaagctttcttaggataaccaacatagccaaaaacaatttcttagtcattagcagttctccatggtttgatgtttatggtaatg 100  Q
    |||||||||| ||||||||||||| ||||| |  | | |||  |||| || |||||| ||  |||||| |||||||||||||||||||||||||||||||    
T  7606345 tcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttcatatccattagtagttctccatggtttgatgtttatggtaatg 7606246  T
Q  101 atttcggatggggaaagcctgtggcggttcgtagtggatataaaatgaaaggacttgttaatgtatttgctggaatagaagaaggtagtattgaccttca 200  Q
    |||||||||||||||| ||| | || |||||||||||||||||||| || ||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  7606245 atttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagtattgaccttca 7606146  T
Q  201 aatctgtcttccttacgagattttggaggcaatgggaaatgaccctcaatttgtggatgttgtgtccaactaatgc 276  Q
    | | |||||||||||| || |||||||||||||||||| |||||| || ||  ||||||| ||| |||||||||||    
T  7606145 agtatgtcttccttacaaggttttggaggcaatgggaagtgacccacatttcatggatgtcgtgaccaactaatgc 7606070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 63 - 242
Target Start/End: Original strand, 7656209 - 7656388
Alignment:
Q  63 cattagcagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtggatataaaatgaaaggacttgttaat 162  Q
    ||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||  || ||| | |||  |    
T  7656209 cattagcagttctccaaagtttgatgtttatggtaatgattttggatggggaaagcctgtggcagttcgtagtggaaataaaacaaatggaatggtttgt 7656308  T
Q  163 gtatttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatga 242  Q
    |  ||||||||||||||||||| ||| |||||||||||| | |||||||||||| |||||||||||||||||||||||||    
T  7656309 gcctttgctggaatagaagaagctagcattgaccttcaagtgtgtcttccttacaagattttggaggcaatgggaaatga 7656388  T

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Target: chr4; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 7628730 - 7628668
Alignment:
Q  1 tcttggttaaaaaatccaagctttcttaggataaccaacatagccaaaaacaatttcttagtc 63  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7628730 tcttggttaaaaaatccaagcttccttaggataaccaacatagccaaaaacaatttcttagtc 7628668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 137
Target Start/End: Complemental strand, 39071002 - 39070932
Alignment:
Q  67 agcagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtgg 137  Q
    |||||||||||  |||||||||||| ||| |||||||| || ||||||||||| ||||||||||| |||||    
T  39071002 agcagttctccgaggtttgatgtttttggcaatgattttggctggggaaagccagtggcggttcgaagtgg 39070932  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 39097623 - 39097547
Alignment:
Q  175 atagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatgaccctcaatt 251  Q
    ||||||||||||||||||||  || || | || ||| |||| || ||||||||||| ||||||||||||||||||||    
T  39097623 atagaagaaggtagtattgatgttgaagtttgcctttcttatgatattttggaggctatgggaaatgaccctcaatt 39097547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 39075160 - 39075095
Alignment:
Q  177 agaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatga 242  Q
    ||||||||||||| ||||  ||||| | ||||||||||| || ||||||||||| |||||||||||    
T  39075160 agaagaaggtagtgttgatattcaagtttgtcttccttatgatattttggaggctatgggaaatga 39075095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 39088057 - 39087996
Alignment:
Q  70 agttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcg 131  Q
    ||||||||| ||||||||||||||| ||||||||| || ||||| |||||||| | ||||||    
T  39088057 agttctccaaggtttgatgtttatgataatgattttggttgggggaagcctgtaggggttcg 39087996  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 39097734 - 39097682
Alignment:
Q  70 agttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgt 122  Q
    ||||||||| |||||||||||||||||||||| || || ||||| ||||||||    
T  39097734 agttctccaaggtttgatgtttatggtaatgactttggttggggtaagcctgt 39097682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 39091448 - 39091389
Alignment:
Q  70 agttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggtt 129  Q
    ||||||||  ||||||||||||| ||||||||||| || ||||| |||||||||| ||||    
T  39091448 agttctccgaggtttgatgtttacggtaatgattttggttgggggaagcctgtgggggtt 39091389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 39082393 - 39082336
Alignment:
Q  80 ggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtgg 137  Q
    ||||||||||||||||||||||||| || ||||| ||||| || | |||||| |||||    
T  39082393 ggtttgatgtttatggtaatgattttggttgggggaagccggtaggggttcgaagtgg 39082336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 182; Significance: 3e-98; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 46 - 363
Target Start/End: Original strand, 8936147 - 8936464
Alignment:
Q  46 aaaaacaatttcttagtcattagcagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtggatataaaa 145  Q
    ||||| |||||| ||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || | |||| |||||||||||     
T  8936147 aaaaagaatttcatagccattagcagttctccgtggtttgatgtttatggtaatgattttggatggggaaagcctgtagcaggtcgtggtggatataaag 8936246  T
Q  146 tgaaaggacttgttaatgtatttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatgaccc 245  Q
      || |||||| |||  |||||||| |||||||||||||||||||||||||||||| | |||||||| || |||||||||||||||||||||||||||||    
T  8936247 caaatggacttattacagtatttgccggaatagaagaaggtagtattgaccttcaagtttgtcttccatatgagattttggaggcaatgggaaatgaccc 8936346  T
Q  246 tcaatttgtggatgttgtgtccaactaatgcaacgtgaggtgtgtaaaatcaatttgatacagtattgttcagatgcttcaatttggtttttgtgtgaca 345  Q
    ||||||  ||||||||| |||||||||||||||| ||| |||||||||||||||||| |||| ||| ||| | |||||| |||||| |||||||||||||    
T  8936347 tcaattcatggatgttgcgtccaactaatgcaacatgatgtgtgtaaaatcaatttggtacaatatcgttgaaatgcttgaatttgttttttgtgtgaca 8936446  T
Q  346 acccatgaataatttttt 363  Q
    |||| |||||||||||||    
T  8936447 acccttgaataatttttt 8936464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 8941747 - 8941990
Alignment:
Q  1 tcttggttaaaaaatccaagctttcttaggataaccaacatagccaaaaacaatttcttagtcattagcagttctccatggtttgatgtttatggtaatg 100  Q
    |||||||||| ||||||||||||| ||||| |  | | |||  |||| || |||||||||  |||||| |||||||||||||||||||||||||||||||    
T  8941747 tcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttcttatccattagtagttctccatggtttgatgtttatggtaatg 8941846  T
Q  101 atttcggatggggaaagcctgtggcggttcgtagtggatataaaatgaaaggacttgttaatgtatttgctggaatagaagaaggtagtattgaccttca 200  Q
    |||||||||||||||| ||| | || || ||||||||||||||||| || ||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  8941847 atttcggatggggaaaacctatagcagt-cgtagtggatataaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagtattgaccttca 8941945  T
Q  201 aatctgtcttccttacgagattttggaggcaatgggaaatgaccc 245  Q
    | | ||||||||||||||| |||||||||||||||||| ||||||    
T  8941946 agtatgtcttccttacgaggttttggaggcaatgggaagtgaccc 8941990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 63 - 315
Target Start/End: Original strand, 8913668 - 8913913
Alignment:
Q  63 cattagcagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtggatataaaatgaaaggacttgttaat 162  Q
    |||||| |||||||||| ||||||||||||||||||||||       |||||||||||||||| |||||||||||||||||||| || |||||| |||      
T  8913668 cattagtagttctccatagtttgatgtttatggtaatgat-------ggggaaagcctgtggcagttcgtagtggatataaaataaatggacttattaca 8913760  T
Q  163 gtatttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatgaccctcaattt-gtggatgtt 261  Q
    |||||||  |||||||||||||||| ||| ||||||||| | |||||||||   ||||||||||||| ||||||||||||||| ||||||  ||||||||    
T  8913761 gtatttgtcggaatagaagaaggtattatagaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatgaccc-caatttcatggatgtt 8913859  T
Q  262 gtgtccaactaatgcaacgtgaggtgtgtaaaatcaatttgatacagtattgtt 315  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||| |||||||    
T  8913860 gtgtccaactaatgcagcgtgaggtgtgtaaaatcaatatgatacaatattgtt 8913913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 66 - 266
Target Start/End: Original strand, 40147440 - 40147640
Alignment:
Q  66 tagcagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtggatataaaatgaaaggacttgttaatgta 165  Q
    ||||| ||| || |||||||||||||||||||||||||| ||||||||| | |||||||| ||||| |||||| ||||||| |  ||| |  ||| ||||    
T  40147440 tagcaattccccgtggtttgatgtttatggtaatgattttggatggggagaacctgtggcagttcgcagtggaaataaaataagtggaatgattactgta 40147539  T
Q  166 tttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatgaccctcaatttgtggatgttgtgt 265  Q
    |||||||||| |||||||||||| || ||| ||||| | ||||||||| || ||||||||||||||||||||||||||| | | ||  ||||||||||||    
T  40147540 tttgctggaaaagaagaaggtagcatggactttcaagtgtgtcttcctcacaagattttggaggcaatgggaaatgaccatgacttcatggatgttgtgt 40147639  T
Q  266 c 266  Q
    |    
T  40147640 c 40147640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 66 - 242
Target Start/End: Complemental strand, 8102499 - 8102323
Alignment:
Q  66 tagcagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtggatataaaatgaaaggacttgttaatgta 165  Q
    ||||||||| |  ||||||||||||||||| ||| |||| ||||||||||| || ||||| ||||| |||||| |||||   |  |||||  ||  ||||    
T  8102499 tagcagttcccagtggtttgatgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgta 8102400  T
Q  166 tttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatga 242  Q
    |||||||||||||||||||||||||| ||||||||| | ||||||||| || |||||||||||||||||||||||||    
T  8102399 tttgctggaatagaagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatga 8102323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 69 - 274
Target Start/End: Complemental strand, 6500540 - 6500335
Alignment:
Q  69 cagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtggatataaaatgaaaggacttgttaatgtattt 168  Q
    |||||| || ||||||||| |||||||||||||||| |||||||| || || |||||  |||| |||| | |||||||  | ||  | |||| |||||||    
T  6500540 cagttccccgtggtttgatatttatggtaatgattttggatgggggaaacccgtggcatttcgcagtgtaaataaaatagatggtatggttagtgtattt 6500441  T
Q  169 gctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatgaccctcaatttgtggatgttgtgtcca 268  Q
    ||||||| |||| |||||||||| ||||||||| | |||||||||||| ||| |||||| |||||| |  |||||||| | ||  |||||| ||||||||    
T  6500440 gctggaaaagaataaggtagtatagaccttcaagtttgtcttccttacaagactttggaagcaatgagttatgaccctaatttcatggatgctgtgtcca 6500341  T
Q  269 actaat 274  Q
    ||||||    
T  6500340 actaat 6500335  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 11968861 - 11968807
Alignment:
Q  176 tagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggc 230  Q
    |||||||||||||||| ||| || || | |||||||||||| |||||||||||||    
T  11968861 tagaagaaggtagtatagactttgaagtgtgtcttccttacaagattttggaggc 11968807  T

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Target: scaffold0190 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 4501 - 4435
Alignment:
Q  71 gttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtgg 137  Q
    ||||||| |||||||||||||||||||||||||| || |||||||| ||||||| |||||| |||||    
T  4501 gttctccttggtttgatgtttatggtaatgattttggttggggaaaacctgtgggggttcgaagtgg 4435  T

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Target: scaffold0190; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 274
Target Start/End: Complemental strand, 4390 - 4292
Alignment:
Q  176 tagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatgaccctcaatttgtggatgttgtgtccaactaat 274  Q
    ||||||| ||||| || |||||| || | ||||||||||  || ||||||||||||||  ||||||| ||| | ||| |||||||||||||| ||||||    
T  4390 tagaagatggtagcatggaccttgaagtatgtcttccttgtgaaattttggaggcaattagaaatgatcctgagtttatggatgttgtgtcctactaat 4292  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 15745020 - 15745081
Alignment:
Q  70 agttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcg 131  Q
    ||||| || ||||||||||||||||| |||||||| || |||||||| ||||||| ||||||    
T  15745020 agttcaccctggtttgatgtttatggcaatgattttggttggggaaaacctgtgggggttcg 15745081  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 15196335 - 15196415
Alignment:
Q  166 tttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatgaccct 246  Q
    |||||||| | ||||||||| ||||| ||| || || | |||||||| ||| ||||||||||||  |||||||||||||||    
T  15196335 tttgctggtaaagaagaaggaagtatggactttgaagtgtgtcttccatacaagattttggaggtcatgggaaatgaccct 15196415  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 34174053 - 34173991
Alignment:
Q  178 gaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaat 240  Q
    |||||||||||||||||  ||||| | ||||||||||| || ||||||||||| || ||||||    
T  34174053 gaagaaggtagtattgatattcaagtttgtcttccttatgatattttggaggctattggaaat 34173991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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