View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16653_low_6 (Length: 342)
Name: NF16653_low_6
Description: NF16653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16653_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 36158366 - 36158654
Alignment:
| Q |
18 |
cttatgggccagctataatgtaatgtgtcaggaatgaatagtggtgataggagtattgttttcnnnnnnnnnnnnnnnnnnnnnnnncacaatacaactt |
117 |
Q |
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| T |
36158366 |
cttatgggccagctataatgtaatgtgtcaggaatgaatagtggtgataggagtattgttttcattatattattattattattattacacaatacaactt |
36158465 |
T |
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| Q |
118 |
ttattcattttgctctaaaataaatagatgcaaannnnnnnggagtaatatttacatttatttttgtcaaacaaaaacctacaattataagtcaatattt |
217 |
Q |
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||||||||||| |||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
36158466 |
ttattcattttcctctaaaataaatagatgcaaatttttttggagtaatatgtacattta--tttgtcaaacaaaaacctacaattataagtcaatattt |
36158563 |
T |
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| Q |
218 |
tatnnnnnnnnnnnnnnnntggaaagggcatgcggaatgacaatggaagtataagtataataatagtaaaactgaataaaaacaaggaatgtctctc |
314 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36158564 |
tat------taaaaaaaaatggaaagggcatgcggaatgacaatggaagtataagtataataatagtaaaactgaataaaaacaaagaatgtctctc |
36158654 |
T |
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